library("jsonlite")Warning: package 'jsonlite' was built under R version 4.3.3library("dplyr")
library("stringr")A twitter archive of @nekton4plankton
Click here to see the R code for creating the below
Repository with the source code: https://github.com/halexand/old_tweets
Forked from: https://github.com/wolfganghuber/tweets
The file data/tweets.js is in the Twitter archive (zip file) that I downloaded from X. Adapt path to whatever you have.
archivepath = "~/Downloads/twitter-2024-11-19-e227a8ec133c0c3f1e39968f6368f13714013f6080ab344aa62244569484b2bd/data"
tweets = readLines(file.path(archivepath, "tweets.js")) |>
sub("^window.YTD.tweets.part0 = ", "", x = _) |>
fromJSON(flatten = TRUE) Select tweets and select relevant columns. Here, I chose to drop all retweets and keep all others. Adapt this to your liking.
isrt = grepl("^RT", tweets$tweet.full_text)
out = dplyr::select(tweets[!isrt, ], all_of(c(
date = "tweet.created_at",
text = "tweet.full_text",
id = "tweet.id",
retweets = "tweet.retweet_count",
likes = "tweet.favorite_count",
mediadf = "tweet.entities.media")
))Some cleanup and prettification: add hyperlinks to URLs and tweet IDs, and sort by date (default: ascending).
out = mutate(out,
text = str_replace_all(text, "(https?://\\S+)", "<a href='\\1'>\\1</a>"),
idhtml = sprintf('<a href="https://x.com/nekton4plankton/status/%s">%s</a>', id, id),
date = strptime(out$date, "%a %b %d %H:%M:%S %z %Y", tz = "UTC")
) |> arrange(desc(date) )Deal with media. Tweets that have media associated (images, movies) come with a data.frame in the tweet.entities.media column. We also just go and find all media whose filename contains the tweet ID (see code for ip below) and check consistency.
indir = file.path(archivepath, "tweets_media")
outdir = "media"
mediafiles = dir(indir)
out$media = character(nrow(out))
if (file.exists(outdir))
unlink(outdir, recursive = TRUE)
dir.create(outdir)
for (i in seq_len(nrow(out))) {
m = out$mediadf[[i]]
if (!is.null(m)) {
stopifnot(is.data.frame(m), nrow(m) == 1)
key = tools::file_path_sans_ext(basename(m$media_url))
im = grep(key, mediafiles)
ip = grep(paste0("^", out$id[i]), mediafiles)
if (length(ip) == 0) {
message(sprintf("%s from tweet #%d not found", key, i))
} else {
#stopifnot(im %in% ip)
file.copy(file.path(indir, mediafiles[ip]), outdir)
out$media[i] = paste(
"::: {.tweet-media}",
paste(sprintf('{.lightbox .resized-image}', file.path(outdir, mediafiles[ip])), collapse = "\n"),
":::", sep = "\n")
}
}
}Create the markdown text for each tweet. The main work here is done by the CSS file.
tweetsmd = with(out, sprintf(
'::: {#%s .tweet}
::: {.tweet-header}
<span class="tweet-timestamp">%s Retweets: %s Likes: %s</span>
<span class="tweet-handle">%s</span>
:::
::: {.tweet-content}
%s
:::
%s
:::
', id, as.character(date), retweets, likes, idhtml, text, media
))Inject into the document.
cat(tweetsmd, "\n", sep = "")@oceanatalie1 Congratulations Natalie!!
And @shu251 presenting on deep sea eukaryotes at vents (Thursday 9:45 in OB41D) 🌋🌊🧬🦠
Patrick White (@MicrobialOcean lab) presenting on glacial impacts on phytoplankton dynamics (Thursday 14:15 in OB43C) ❄️🦠🧬
@LukeThompson presenting the Bio-GO-SHIP metagenomic intercalibration effort (Poster on Tuesday in OT24C) 🧬🛳️🌊🧬
@MargaretBrisbin (now a Prof at @USFCMS) is presenting the omics data she added onto an existing time series in Massachusetts Bay. Went looking for Phaeocystis blooms and came away with a super interesting dataset. (Thursday at 09:03 in OB41B) 🛥️🗓️🌊🧬
Sad to be missing #OSM24 this year!
But be sure to check out:
@akrinos is presenting on her work integrating transcriptomic data to inform a physiological model for phytoplankton thermal stress (Monday at 11:15 in OB12A) 🦠🌡️🧬👩💻
I find it deeply concerning that so much of healthcare (especially for the medically complex and disabled community) is tied to corporate greed which prioritizes financial outcomes.
Even before this announcement, supply chain issues and ventilator availability held up many people from getting discharged from the hospital. We originally were going to go home with a Trilogy but it was harder to get (and other options seemed to fit well for our kiddo).
As the mom of a kiddo who has been ventilator for the majority of their life, Philips’s decision to “streamline their portfolio” and discontinue the main line of home ventilators is terrifying. https://t.co/RDlrBVz5zc https://t.co/6WJ8PDGmTU
@nikeapittman Congratulations! We recently went through the NICU roller coaster with our twins (for 4 and 15 months). Remember to take care of yourselves– NICU time with a micro-preemie is a marathon. But, these little ones are amazingly strong 💞
I have 3 invite codes for bluer spaces. DM if you want one 🌊🦠🧪🧬
Excited that EukHeist is out in @mbiojournal : https://t.co/90ppj3JDgU
Workflow GitHub here: https://t.co/C07R0DEGw8
All the MAGs and data here: https://t.co/vYX97A5nfd
Thanks to @shu251 @ariannakrinos @microbiaki @ReiterTaylor @phantomBugs @ChrisJNeely https://t.co/dJpW6FJwJb
The Biology Department @WHOI is hiring! https://t.co/ORqlJiY19V
Do you study marine viruses? This position might be a great fit for you! Come work with us! 🦠🌊
@darkmicrobio Congratulations!! And welcome to the world, Josephina!
Come do a postdoc at @WHOI! Applications for Postdoc Scholar due October 15. 🌊🛳️👩💻🧪 https://t.co/W868cprjUt
Come learn about the Arctic with @oceanslebrasi and others 🐻❄️🧊❄️🛳️ https://t.co/zLX57AsOGa
@MargaretBrisbin Sorry qubit, Ruby takes this one!
Starting in 5 minutes– webinar on data management with talks from Reiner Schlitzer, Stephane Pesant, Danie Kinkade, and Karen Stocks ! https://t.co/2LQSPZHnoz
@RobynCohenMD As the mom of a kiddo with sever BPD– thank you!
And, I cannot say enough about the amazing work that @FranciscanHFC does. Helen thrived at the Fran– they made it so she could come home! https://t.co/IwmJCYtQi6
One day I want to hope to reflect a bit more on what becoming a mom to a medically fragile child is like and how it has impacted my career and life more broadly (@Momademia). But this is being written during the ✨magical✨ moment that both girls are asleep.
The piece above does a great job of summarizing… needless to say it has been a long, hard, beautiful 15 months. We are together as a family of four thanks to amazing nurses, nurse practitioners, therapists, doctors, medicine, and science.
Big news in the Alexander-Astiz household! @oceanslebrasi and I are pleased to announce that our twin girls have finally been reunited at home ✨👩👩👧👧💞
Interested in ’omic intercallibration? Join us tomorrow Jan 25 1100-1300 EST for a @biogeoscapes webinar for a panel of talks and breakout discussions. 🧬🌊🧬
Sign up here: https://t.co/y5DHAAQEuG https://t.co/ZtyMdQc9n4
Congratulations @ariannakrinos !! A amazing protistologist in the lab and on the computer 🧪👩🔬👩💻🦠 https://t.co/BSVGm8Xc5c
Congratulations to the amazing @MargaretBrisbin!! We are going to miss her but are so excited to see her new lab get started!
Also, check the graduate opportunities! https://t.co/EGTfbOllnH
@ScottDoney1 @WHOSTP @uvaevsc @UVA Congratulations Scott!
So check it out!
GitHub here: https://t.co/btpHB5t07g Documentation here: https://t.co/fZ3ZtPrFoZ jEUKbox here: https://t.co/fZ3ZtPrFoZ
Feedback / comments welcome!
Applying these eukrhythmic to previously published studies revealed better taxonomic resolution and enhanced recovery of gene families. (Improving significantly on a previous paper of mine 🙃) https://t.co/XrVEkqrszA
We constructed gold standard eukaryotic metaT communities from eukaryotic transcriptomes using jEUKbox (https://t.co/X8TlHfgAvR) and tested various assemblers and co-assembly methods. Read recruitment and assembly stats were improved by integrating info from multiple assemblers. https://t.co/sTYWgYrT5A
Super excited to see @ariannakrinos paper on eukrhythmic out on @biorxivpreprint. https://t.co/szyhoRWOVn
We took a deep dive into optimal methods for metatranscriptome assembly and analysis and present the eukrhythmic automated pipeline. https://t.co/btpHB5t07g @oceanatalie1 https://t.co/01agPF1XOG
@LizKuj @NSF @MicrobialPlanet @WHOI @UGA_MarineSci Amazing news!! Congratulations!!
@ackero9 @SimonsFdn @Scripps_Ocean Congrats!! Super exciting 🏄♀️
@alexcr_1 @ResearchAmerica So cool! Go Alex!!
@merenbey @SpongeSymbiont I will be sure to fix it in the next version of the paper.
@merenbey @SpongeSymbiont Total oversight on my part– thanks for pointing it out. We had it in the main text and I think it got accidentally moved somewhere during edits.
We did a clustering analysis and phylogeny to examine overlap between the two datasets (see SI figures 14 and 15).
@joanmahp Yep… I see it 😂
This tool has obvious utility beyond eukaryotic MAGs and will be useful with eukaryotic genome projects.
A major component of the EukHeist project was figuring out good, high-throughput gene calling for our novel eukaryotic MAGs. @ChrisJNeely and @phantomBugs have created an awesome framework to do just that! Checkout EukMetaSanity https://t.co/wPvyZFI0Xl & https://t.co/fvnG4UR92m https://t.co/SNbnLvtk8O
We have posted all the eukaryotic and prokaryotic MAGs, which we call TOPAZ (Tara Oceans Particle Associated MAGz) and associated supplementary information on @OSFramework https://t.co/vYX97AmY6L
It was a super fun and collaborative project with @shu251 @ariannakrinos @microbiaki @ChrisJNeely @phantomBugs @ReiterTaylor
We also leveraged metagenomic abundance to pull out ecological cohorts of euks + proks – and also potentially associated some host-microbiome type interactions. https://t.co/VV5t66ehou
Additionally, we recovered over 4000 prokaryotic MAGs that were found to be distinct from previous sets of marine bacterial isolate genomes and prior marine MAG recovery efforts– perhaps highlighting the particle associated fraction. https://t.co/godWaROLLJ
As part of the project we developed a random forest model to predict trophic mode of our recovered MAGs as well as a quantitative metric to assess relative heterotrophic-phototrophic inclination. https://t.co/PMJfWD59GC
We developed a pipeline (EukHesit) focused on the recovery of eukaryotic MAGs from metagenomes. We deployed this pipeline on the Tara Oceans large size fraction data to recover over 900 eukaryotic MAGs.
Happy to finally get this out on bioarxiv: Eukaryotic genomes from a global metagenomic dataset illuminate trophic modes and biogeography of ocean plankton https://t.co/gQMS8l2ih8 https://t.co/xPnp5YrcBP
@rmbundy No, but actually, when I submit this paper…
@DNAkendra Congrats! But also, yes, that is a tight turn around :/
This interactive visualization of parental leave really shows the benefits of working at a Canadian university… https://t.co/fsta369p9Q
[Also it would have been nice to see more inclusive language used in the viz and article…]
“…in the United States, where family-leave policies are often sparse or absent, the proportion of mothers in full-time STEM careers who leave after their first child is as high as 43%.”
A point that warrants further investigation: estimating pathway completeness in transcriptome based perhaps by leveraging pathway coverage in closely related organisms. I am fairly certain that we are underestimating osmolyte pathways as we were quite stringent.
We also leveraged Tara to look at the expression of these pathways across the global ocean. https://t.co/bwVoFkvm7c
We attempted to predict osmolyte synthesis, breakdown, and transport across marine organisms. @CHONPSoup and @MetaboMcP did an extraordinary amount of metabolic map curation for this project. https://t.co/nf8nXCZ77e
This paper came out of some random conversations and was the most collaborative paper I have ever worked on– really a fun experience (including many weekend zoom writing sessions).
Excited to see this paper with @MetaboMcP and @CHONPSoup out!
The Osmolyte Ties That Bind: Genomic Insights Into Synthesis and Breakdown of Organic Osmolytes in Marine Microbes https://t.co/rs2d6sjo5V
A great morning read as we wrap up #pride month! Featuring @oceanslebrasi @palaeobak and Bonnie Ludka with the interview put together by @kylefrischkorn
🏳️🌈🌊🗻🧊🌈 https://t.co/Gfb2P12YCV
@ashbc1988 Thank you!! You should join the euk-side. (most) of them don’t bite. https://t.co/vzzP7QvKB9
Excited for the start of the 2021 #BVCN conference today! Looking forward to today’s talks from @Mallick_Himel and @MiriamJBravo1 ! https://t.co/VqAnPa43t0 https://t.co/nNAUGvLQqn
@Morgan_Colp @scottmccain5 @oceanatalie1 @FinlayM @robhlampe @luis_valentin26 @shann_sib Seconding those! Also kofamscan for CLI version of ghostKOALA https://t.co/CZobN0grJp and eggNOG https://t.co/r9pirV6azs or pfamscan
@astro_microbe @SimonsRock @WHOI @MBLScience Congratulations!!!
@ca_durkin So cool and a great use of quarantine time!
Hope you have smooth sailing and great science!
We are working to expand these types of global-scale sampling efforts to better characterize plankton wrt biogeochemistry and hydrography with Bio-GO-SHIP: https://t.co/r8B6CLyTAD 🌊🦠
This paper shows the power of coupling biological measures with global-scale existing hydrographic programs like GO-SHIP.
Exciting new paper out tracking global-scale patterns of nutrient limitation: https://t.co/6DiH3r4knH @LucasUstick @UCI_OCEANS @aalarkin et al. https://t.co/IJ67n0LCQG
@soFISHtication Welcome! Excited for you to join the MIT-WHOI community!
@JulesDeep @NSF @nrwegian @CapeCodComCol @WHOI Awesome news!! Congratulations! So excited to expanded @WHOI!
I am very excited to have the opportunity to give a talk at the #BVCN conference this June!
You can find out more about the conference here: https://t.co/9Xhyrw7JV3
It is free and registration is open until April 14th! #bioinformatics #microbiology https://t.co/ElUmh2IytP
@byuhobbes I am also curious about this!
@katethecurious @NSFGRFP @phylogenomics @BanfieldJill @MicrobeExplorer Congratulations!!!
@ca_durkin I love the colors in your knit!
@DrAnyaBrown @ucdavis @ucd_cmsi @bodegamarinelab Congratulations!!
This is what I get for checking what my python created SI table looks like in excel…
Dear Excel,
I promise to let you know when I am entering a date. Right now I am not entering a date.
Sincerely,
@michellershero @JulesDeep @RadicalMicrobe That is the worst! I am sorry, Michelle.
@michellershero @RadicalMicrobe @JulesDeep Haha, or me!
@katethecurious @ctitusbrown @MIT @WHOI @microbiaki @phylogenomics @BanfieldJill @MicrobeExplorer +1 :)
@MargaretBrisbin … I had a hunch… @MetaboMcP
@MargaretBrisbin … that being said I have strong feelings on the matter.
@USC_marine @ctitusbrown @jcamthrash Congrats @jcamthrash !!
@tellurianite @shu251 @WHOI +1 Yes please!
@goodnesglaciers @shu251 @WHOI 💕RV Poopsie
@ackero9 🥶🌊🏄♀️🏄♀️
If it looks good?
@ackero9 Congrats Doctor!!! You deserve a good surf session and all the best chocolates :)
@Skoogbacter Super exciting! Congrats!!
Time will be split between our two labs and you will get to work with awesome people including @zac__tobias @ariannakrinos and @MargaretBrisbin!
🚨Job Posting! 🚨
@CTepolt and I are looking to hire a joint Lab Tech in the general area of Marine Genomics to start in the spring of 2021 @WHOI!
Find out more here: https://t.co/XTNHDUBrUY
Apply here: https://t.co/YI7tBocxE8
Please distribute!
@pgirguis I would be remiss not to share this gem of a thread from @CTepolt in which she meticulously ranked all available PopTart flavors https://t.co/vw5DwMQMgt
@ackero9 Congrats!!
@rmbundy This is brilliant. I want to give it a try.
@saroraaustralis Congratulations!! I can’t wait to hear about your new courses :D
@altagliabue @eco_genome @ElenaLitchman @CarnegiePlants Agreed! Super representation of her work!
@AstrobioMike Just panic checked my recent workflow. https://t.co/cVwYCdqlgL
Introverts: Imagine you have been quietly listening in a zoom meeting but not speaking. Do you feel that it is helpful to have the meeting facilitator specifically call on you to contribute?
Systemic inequalities for LGBTQ professionals in STEM https://t.co/2aK1x682iQ “STEM societies continue to be vital for fostering conversations about LGBTQ inclusion … and should consider these matters in light of the cultural and institutional issues specific to their fields.”
@ca_durkin @smith8272 @LizKuj @CHONPSoup Ah, a classic video! I was hoping it would make its way to Twitter :)
@crispinoblong Just over here flaunting my mythical sexual orientation that is a central dogma of my secular humanist religion.
@caleweissman I would 100% join ticktok if the stan rogers album challenge became a thing. #northwestpassageofmyheart
I have to say that the JOSS review process (https://t.co/75msGA26DB) was one of the best I have ever participated in. The reviewers and editor really helped improve our paper and software and the whole process felt very constructive. Many thanks to them!
Check out the @readthedocs for more info: https://t.co/Tua8HtTdwE
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes is out in @JOSS_TheOJ! https://t.co/vJKTS4bhbp
Awesome effort by @ariannakrinos with @shu251 and @oceanatalie1 https://t.co/AcW5h5xePP
@HeathervdH … yep. I think we all did.
@ekbors @SirPatStew 💯 @oceanslebrasi and I (re) watched it this fall and it really stood the test of time.
@AmyApprill @WHOI Congratulations!!! 🎉🍾
@aeawhite That is awesome!! Great job!
@ctitusbrown @ariannakrinos @oceanatalie1 @shu251 @shu251 is in the same hardcore memorization boat.
Mine was: King Phillip Cries Out For Genuine Spaghetti
Today @ariannakrinos @oceanatalie1 @shu251 and I were comparing the mnemonic devices we used to memorize Kingdom Phylum Class Order Family Genus Species.
What was yours?
@oceanatalie1 @SkIOinSavannah Congratulations!!
@smith8272 @jess_carilli 😂😂😂
Always interesting to hear a bit more about the backstory of a paper! Nice thread and great paper @phantomBugs @perilousUnknown https://t.co/YVVGCD2750
@apcamargo_ @nomad421 @ReiterTaylor @microbiaki and I just did a comparison of that style of bam filtering (98%id +htseq) and salmon — the results were remarkably similar!
So cool!!! 🤖 💦 🦠 https://t.co/PfWFFOH8n3
@hypeman … or the geophysics of a hollow earth. That could be fun too.
@hypeman I call the PhD on the social structure of the lizard people.
@fungi_lover Absolutely. I was shocked in my first year how isolated I felt. Finding opportunities to collaborate with other Ass. Sci at my institution (h/t @microbiaki) helped a lot. I can’t imagine how much harder it must be starting during COVID!
@ctitusbrown @ReiterTaylor Congratulations Dr Reiter!!! 🍾🥂
@ctitusbrown @shu251 Moms… tell it how it is ;)
Congrats to @ariannakrinos who just finished teaching her first @thecarpentries workshop! She is now officially an instructor!! 🌟
… and all this on top of submitting a paper, 3 classes, and mondo culture work… and a pandemic. #RockStar
@shu251 @ctitusbrown … she then told me I used my hands too much. Gotta love the honest feedback ;)
@shu251 @ctitusbrown One time my mom traveled to a meeting with me (for vacation). I told her she couldn’t watch my talk… so she sweet talked a waiter into letting her watch from the service entrance. 😳
Happy #LGBTQSTEMDay !
I feel lucky to live and work in a community where I can love openly.
I hope one day that can be true for everyone. https://t.co/2JTBoTXqzB
@SymbiosisRox @AquaticSterling @shu251 @microbiaki Afraid I haven’t used ribotagger— but have used sortmerna and PhyloSift. I would be curious to hear how it goes!
@byuhobbes @luizirber I definitely have— no idea how to fix it though.
@jcamthrash @oceanatalie1 might have some ideas :)
@jcamthrash I have concentrated over a qiagen column– but you lose quite a bit of total RNA in my experience. https://t.co/jSdtuR9QF3
@jcamthrash Do you mean already extracted RNA that you want to concentrate?
@AstrobioMike Something I have been wanting to dig into. We should talk! The problem (IMO) is lack of reference sequences.
EUKulele is up on @arxiv! It has been so fun working with these “eukuladies” @ariannakrinos @oceanatalie1 @shu251 ! Check out the docs here: https://t.co/Tua8HtBCF6 https://t.co/szl09FInIY
@ca_durkin @MaxwellHanrahan Congratulations!! Well deserved!
$14 billion spent on the 2020 election. $8.3 billion slated for the 2020 NSF budget.
We have a problem.
Evolutionary diversification of tiny ocean predators https://t.co/1xLNtk8WxC
@GreeneScientist @CUAnschutz @CUMedicalSchool Congratulations Casey! Sounds like an awesome opportunity!
@rafabbriano @smith8272 Awesome! I have also found IGV to be a bit sluggish but I think it is because I am trying to run it on a laptop…
@ReiterTaylor Interesting thought! I wonder if (for euks) splicing would mess it up? I will check it out!
@JMA_Stough Ah! Cool! Alas, I am interested in the not-so-circular eukaryotes.
I should have added eukaryotic above ;)
Anyone have a good recommendation for visualizing an assembled transcriptome alignment against a reference genome?
Is IGV the best option?
Asking for a friend (but actually).
@jongsanders @maitreyiaa @DefectorMedia Great essay! Thanks for sharing. This is what @oceanslebrasi and I have been discussing on our walks this week: https://t.co/KXOhxjhR6N
@luis_valentin26 I think it is my favorite Euk as well btw ;)
@luis_valentin26 That would be amazing to do. Currently we aren’t planning to look into life stages– but I believe that we have at least one strain that is haploid.
But, we also noted evidence of variable responses by strains (not published in this paper, unfortunately). We are looking to dig into what (if any) genomic elements are driving these observed differences in transcription across strains.
The results from this study showed a strong coordination in N-resupply across replicated experiments. https://t.co/47biMimMSo
A lot of the preliminary work for this grant came from a paper we published this year looking at the impact on N-input on E. huxleyi in an oligotrophic ocean environment: https://t.co/w6kMYZXH2r
@giant_virus @DyhrmanLab Thank you!!
We have collected a variety of strains of Ehux from around the globe thanks to @NCMA_GotAlgae and @RCC_algae. The little guys have taken well in the lab, so we are on to the next step: genome sequencing and culture experiments! https://t.co/RaOoF0kZ6S
Excited to be getting our #NSFFunded project on the pan genome of Ehux off the ground! https://t.co/8FK6i1gUTN
@MargaretBrisbin @votefwd @oceanslebrasi We only wrote 2 or so sentences per letter… so pretty chill! Awesome that you are mailing postcards!
@cupoashley Total doggo doppelgängers! They even appear to have a shared favorite hobby: couch snoozing. Spanish Water Dog?
Sevilla is totally tuckered from all that letter writing to potential voters for @votefwd !
Are you registered to vote? https://t.co/qrTTWOa64S https://t.co/1KlfEVtJrC
@markiebeth . . .
@UCI_OCEANS @BioOce @environmicrobio Yes, thank you for explaining the process!
@raynamharris Thanks! I like your layout :)
@ctitusbrown @luizirber Congratulations DR @luizirber!!! 🧬🧑💻🍾
@ja_langan @DrKeltonMcMahon Haha, I know the struggle! I will DM.
@jcmcnick @MarioMuscarella @jcamthrash @microbiaki Thanks, y’all. I suppose I should focus on more pressing things….
@Paul_Carini Roger that.
@jamesrco lol. I wish that was really my problem…. pretty sure it is just the format of the bibliography ;)
For reference: https://t.co/nmnlq3VZkq
Anyone have an academic CV latex template that they like? I am tired of mine (moderncv) – the bibliography looks crowded.
I was surprised and happy to find out I was featured on @500QueerSci instagram today: https://t.co/zJ3Q7ZWMZg #queerinstem #visibilitymatters
@rmbundy 💕 Congratulations you guys!!
@RadicalMicrobe @WHOI Congratulations!!!
@MelindaPerle Minor?! So sweet!
@Th_Mock @jgi @uniofeastanglia @ueaenv @EarlhamInst @plaza_genomics Amazing! Congratulations!
@balkalarre @ERC_Research @IBE_Barcelona Congratulations, Dan!
@kendraturk @ucsc @GavinNewsom @RyanCoonerty @RepAnnaEshoo I am so sorry, Kendra!
@ScottWankel @WHOI Congratulations!!!
@AnnTarrant2 Super cool find!
@robhlampe Such a cool visual representation! 🌈
Looking to organize some automated backups to the cloud? @ariannakrinos has you covered with a nice description of how to set up rclone on your HPC:
@gserratomarks @eapsMIT Congratulations!!! 🍾
@OceanDeepa @ctitusbrown Ugh! The worst. Yes, I think CS5 is 32 bit and so can’t be moved forward. :/
@dohnemus …. now I am nervous. What happens?
Update: all is well. Even my old version of Illustrator CS6 still works.
@ctitusbrown Thank you! All appears to be well. I was mostly worried about my Illustrator CS6 not working– but legacy java pulled me though :)
Updating my OS after a long time of not updating gives me anxiety. 🙏🙏🙏
Stand by …
@luizirber Awesome! It is pretty exciting (and assuring) to see such high containment within metagenomes. I am checking out the binder now ;)
@luizirber Those numbers are insane @luizirber! Super cool work – looking forward to the blog on the results :)
@JulesDeep @shu251 Me three.
@ctitusbrown Yep. I am down for this.
@rmbundy @smith8272 @katherine_heal Can I join in too? I feel like I am just making up my process as I go.
Also, why don’t we learn this in grad school?
@goodnesglaciers @OxUniEarthSci @UnivOxford Congratulations! So well deserved! 🌈❄️
Thanks to Nate and Li Ling who put together a socially distant flotilla to wave them off from the water! 🚣🚣♂️🚣♀️ https://t.co/YmXyrfHUKR
Saw off @oceanslebrasi and the rest of the (reduced) #OSNAP crew as they headed out for Greenland on the R/V Armstrong @WHOI. Wishing them calm seas and good weather for their transit and mooring ops! ⛴️🌊👋 https://t.co/GNQGpH0zmT
@byuhobbes Serious shade! 😂
I too tried plotting some non-science stuff in excel recently and quickly gave up.
@harveyplankton three very differently colored 374s ;)
@environmicrobio @AmandiOnAir Agreed.
Read this thread.
#BlackLivesMatter https://t.co/rsppw2srsf
@Bethany_L_F Congratulations! Great looking paper– I am excited to read it :)
@JulesDeep @pgirguis @NewYorker Good! I was so disappointed with that article.
Seconding @EggErin ! It was so great to see @blumlikeplum defend her senior thesis today! She put in a lot of hard work and really made this project her own. https://t.co/2fyZdTSSMw
So happy to share that my wife @oceanslebrasi has officially started as an Assistant Scientist @WHOI (but really from our house) today! After many years of living and working separately it is a huge relief… https://t.co/S6In3D207P
I updated my brew and ruby installs on my computer and somehow effed up wget.
So, how is your Friday going?
@allysauris I would describe mine as bold. My wife and relationship came out mostly unscathed as well.
Get excited!! @ariannakrinos https://t.co/XZOdFq3Qqi https://t.co/1UQqfLyTts
@MargaretBrisbin @MakASaito @fabrice_sbr Congratulations!! You have such a great presentation!
@emmoxiely I vote both! Start a new batch and keep feeding the stinker.
@rmbundy @oceanslebrasi Thank you both for coming!!!
@merenbey @microbiaki Seconding! I think it worked really well in conveying the key concepts of metaG. 💯👍
Nice paper @LexFischer !! https://t.co/bZn2jvWZW8
Went into the lab on Monday to transfer the cultures (including a big, months long experiment by @ariannakrinos ) before @WHOI shut down.
Grow well little plants! We will see you soon! 💕🦠📈 https://t.co/Acxd9nR1xV
So, @markiebeth is a rock genius and never told me. Watch below with sound. You won’t regret. ⛴🤘 https://t.co/C35QDNswjN
This whole “move all communication online” thing has officially gone too far.
@oceanslebrasi: Can I share this with you on slack? Me: No, we aren’t on the same Slack. Izi: Add me to yours? Me: No. Izi: But, couldn’t we make one? For us? Me: WE ARE QUARANTINED IN THE SAME HOUSE
Just met with a subset bioinformatics teachers who signed on to @phantomBugs #pandemic virtual call to action! We are starting to get organized and I am feeling the #bioinformatic warm-fuzzies!
It is on-going, so if you are interested in learning or teaching sign up below! https://t.co/POVhXNHVHK
@camille_codon Congratulations!! I will drink to you tonight!
@rmbundy I have heard of some capitalizing on the social distancing @saroraaustralis 😻😻
@surt_lab @Paul_Carini @IanDEALidbury @malladapted @jemersonmicro I am down! I shall sign up…
@JulesDeep It is time they start earning that arugula.
David Attenborough narrating phytoplankton makes everything better right now.
Thank you @PlanktonPundit! https://t.co/B2jgC8GTJ3
@ca_durkin That is gorgeous! Enjoy!
@rec3141 Just finished it. Might be kind of intense to read during the beginning of a pandemic.
@ca_durkin What are you planning to make?
@surt_lab Me too.
@ca_durkin 😕
@sochunese Super Nova girl!
“But do us a favor, Mr. President. If you want something, start treating science and its principles with respect.”
@twiwanicki @oceanslebrasi @shu251 @markiebeth @MetaboMcP Half-human half-cockatiel obviously. https://t.co/xE3qwrzcHf
@twiwanicki @oceanslebrasi @shu251 @markiebeth @MetaboMcP Would have been next level to have gifted us actual parrots. The actually hid Coronitas all over our house… which really are the perfect size. 🦜🦜🍻🦜🦜
@BramanTyphoon @markiebeth @oceanslebrasi @shu251 @MetaboMcP 🤣🤣🤣
@rmbundy @oceanslebrasi @shu251 @markiebeth @MetaboMcP 💕 I wish we could send you some of the many Coronitas in our house! Bummer that your trip was cancelled!! Highly recommend the tropical decorations… Makes life feel brighter.
@markiebeth @oceanslebrasi @shu251 @MetaboMcP Agreed. Izi’s hair might make it.
@ctitusbrown @oceanslebrasi @shu251 @markiebeth @MetaboMcP Yep. And someone really needs a haircut! Guess what is happening tomorrow :D 💇♂️
Don’t worry… she is in very good hands.
So, if you need us email (or slack, Skype, zoom, Gchat, tweet, etc.).
Until this settles, we will be hanging out with our new parrot friends: Guillermo, Juanitos, and Carlitos (not pictured… camera-shy).
It is so important to #FlattenTheCurve !
Even before it was suggested that we self-quarantine after our trip by or employer we were planning to self-isolate on our return home. While we would likely fair well with the virus we both work with people who might not be so lucky.
Don’t let our fake serious faces fool you– we are feeling very lucky to have such a good support network and quiet and safe house to retreat to.
👋 @oceanslebrasi and I returned from our honeymoon (which was lovely) and are currently on day 5/14 of self-quarantine. Many thank to our amazing friends who stocked our fridge and decorated our house to look like a tropical paradise. @shu251 @markiebeth @MetaboMcP and others. https://t.co/tW7cI4qB5w
@pgirguis @MooreFound Huge congratulations!! So exciting!
@science_is_dope @MIT @WHOI Excited to see you back at WHOI!! Congratulations!!
@crispinoblong Wes Anderson approves.
See you in two weeks, Twitter! @oceanslebrasi and I are in Japan for our (belated) honeymoon! ⛷⛷🏔🌨❄️🌁💕 https://t.co/8j8sKddLt4
And Laura caught her very first wave!! 🏄🏄
#OSM20 marked my 10 year ocean sciences anniversary – I presented a poster as an undergrad in 2010.
This year I got to come to OSM with @blumlikeplum, and it feels very full circle.
Only this time we snagged a fun sunset surf to celebrate a successful conference! https://t.co/s3fFysnS0r
@ca_durkin @shu251 Thank you, Colleen!
Cool data with ferritin as a function of quotas @robhlampe ! Going too fast now to tweet it all!
Transcriptomics can help to link taxonomy and function to cellular quotas with data from @marchetti_lab et al.
Diatoms and flagellates behave differently across Fe gradients– diatom N-lim limits the ability to get Fe?
Can this be resolved when combined with omics?
“if you are not your best self in the ocean you will get out competed” too true. Even beyond Fe/C quotas
How do cellular quotas change over ocean gradients?
Hard to tease apart as communities also change. Solution: combine measurements with omits #osm20
Last talk in @biogeoscapes session– @DrSingleCell !
He said he hid a prize under our seats a la Oprah. But not so… Instead we get to learn about cellular quotas. #okaybyme https://t.co/AaDcGLKNEx
But the golden question: can we model growth rates? That is the dream.
Combining metabolic model with proteomics to make predictions about allocation of proteins across functions.
So cool! Excited to see this paper come out! @MicrobialOcean
.@scottmccain5 talking about the difficulties work metaproteomics – some cool modeling work to deal with uncertainty.
Peptide annotation is not easy! #osm20 https://t.co/gfazLWY3QW
Keep up with @biogeoscapes by emailing info@biogeoscapes.org! https://t.co/5RxqUAvJNS
As a omics person it is all too easy to slip into jargon.
Important discussion happening in @biogeoscapes room right now about the importance of improving communication between groups (e.g. omics and modelers) #OSM20
“If you have a process you want to study, I have a molecule for you” – @LizKuj
Great lab slogan!
@phantomBugs Sequence. My typing is clearly conference fried.
@phantomBugs @oceanslebrasi
@phantomBugs … maybe I can drowned its genome!
@ekbors Me too! Already on season 2…
Victoria Coles is holding up some great motivating questions when thinking about modeling and sampling efforts #osm20 https://t.co/UbVp5ywRck
Awesome talk! I would never have guessed that it was prepared on short notice!
Really great results showing resilience of these upwelling communities to low pH environments! #OSM20
Field incubation experiments were run to assess Fe uptake as well as metaomics
.@robhlampe is now up sharing his work on the interactive effects of ocean acidification and iron uptake in diatoms
Takeaway: this is a cost effective means of assessing diversity from A-Z (archea to metaZoans)
And maybe they can even help inform and constrain models
They are also good at detecting rare organisms: e.g. ucyn-a and it’s host!
How do these universal primers do at resolving the Prochlorococcus classes? Pretty well!
.@jcmcnick is up now talking about the application of universal primers to huge transects like those from Biogeotraces #OSM20
Great talk by @katherine_heal on arsenic’s journey through particles in the ocean. Wonderful example of linking metabolics and metatranscriptics to understand biogeochemistry!
Make sure to stop by Natalie Cohen’s poster tonight (#808) to learn about hydrothermal vents and microbes! #OSM20 @MakASaito 🦠🌋🌊
Lot’s of great food for thought on the micro diversity front. I love hearing how the Prochlorococcus story continues to evolve.
Some hypotheses on the potential drives of the observed differences 🦠🌞 https://t.co/rsmtxOcvXT
Both were abundant but abundance doesn’t correspond to activity!
Two OTUs LL1 and HL2 were the main responders– but closely related ecotypes did not respond.
They did stable isotope probing to assess how carbon is used across the community.
What is more: all these ecotypes coexist in a single drop of seawater.
The question is does this diversity matter in biogeochemical cycles?
.@bluewaterlab showing beautiful patterns in the patterns of Prochlorococcua ecotypes across ecological gradients.
Microdiversity across ecotypes may be related to variability in gene content. #OSM20
I would hop on either of these projects in a heart beat!
Today I have seen two awesome #postdoc job postings:
@RynearsonLab is looking for an omics enthusiast who is interested in microzooplankton grazing
@mixotrophe is looking for mixotroph fan to work on modeling++ in a warming ocean
Generalist vs specialist mixotrophs matter! They are trying to integrate this model into a global biogeochemical models! And they ate looking for a postdoc!
Evolved responses to temperature increases has a direct impact on the carbon cycle. Mixotrophs can be thought of on a gradient of trophic traits.
.@mixotrophe showing awesome experimental data of different strains of Ochromonas (mixotrophs) adapting to long term acclimation to increasing temperatures. #OSM20
A student in her lab has a poster on this topic tonight– I am definitely adding it to my list for tonight. #720 https://t.co/Oii2ZDvYU3
Main takeaway: microeuks in the deep sea are important! And there is a lot of work to do!
What is going on with #sirventsalot – some asvs stand out but the reference database of protists in the deep sea are limiting #osm20
Ciliates and dinoflagellates were both major components of the communities at these sites.
She was able to quantify predation pressure across these vent sites. There was a ton of grazing pressure at #sirventsalot
.@shu251 sharing her work on characterizing the ecological role of protists at deep sea vents.
Unrelated to her awesome science: they got to name the vents. They did a very good job. #sirventsalot #ventilatte https://t.co/nlJcPtr5Uj
Thank you, Heidi for an awesome talk!!
Victor Hensen would certainly be impressed.
The LTER has shown a dominance of the diatom Hemiaulus off the coast in the stratified summer waters!
Chock full of diazotrophs!
A massive DDA bloom! So cool!!!
MVCO currently has 1,011,832,343 images. 4,786,427 have been MANUALLY annotated by Emily Peacock. That is a labor of love.
And now, the timeseries she (and a huge group of others) has been expanded to an official #LTER— the Northeast U.S. Shelf LTER
A huge driver of the widespread use and adoption of IFCB across the field is the associated #OpenSource code. It matters.
Now IFCB might provide a means of early detection for harmful algal blooms (HABs) and has been used all over the US!
The IFCB has even been used to track delicate micrograzers (e.g. ciliates). Work by E Brownlee has shown amazing feeding mechanisms whereby small grazers chow down on huge diatoms.
Can we even maintain the big-eats-little paradigm in oceanography?!
And amazing results from IFCB show a host-parasite seasonal cycles that might be temperature regulated https://t.co/Holyd0LBC6
Trends have also been found in picoeukaryotes that appear to be dividing even faster than Synechococcus and being grazed out. Paper by Bethany Fowler in review.
Trends in Synechococcus https://t.co/mbMrRErsuJ
These instruments have been deployed for more than a decade at MVCO and have provided amazing insights into community dynamics over a decade.
Her hard work (with others) led to the development of the FlowCytoBot and the Imaging FlowCytoBot. Both can be deployed for months at a time and can take high frequency samples.
Thus, much of her work (her whole career, really) has been spent designing automated means of assessing diversity.
The difference between synechococcus and a large diatom is like the difference between a blade of grass and a giant redwood. The diversity matters.
We have many means of measuring phytoplankton at large scale (e.g. satellite ocean color) but it loses the important biological resolution.
Heidi Sosik @whoi is starting off today’s #OSM20 plenary highlighting the challenge of scale in studying the plankton of the ocean.
Awesome first day at #OSM20 — capped off by a wonderful (and busy) poster presentation by @blumlikeplum! https://t.co/7m6xsxJaDy
@jvanderhoop OSM 22 should be in your honor! Hawaii vacay?
@ctitusbrown Congratulations!!!
@oceanslebrasi Props to them both for organizing this event, hunting down the funds, and getting the meetup on the program at OSM. 👏👏👏
Note: I am not one of the organizers (they are @oceanslebrasi + Bonnie Ludka). But I did make the poster ;)
Catch the #rainbowwave at #OSM20! Tuesday 6PM. 🌈🏄♂️
Come meet your fellow #lgbtq scientists– it promises to be a smashing good time! https://t.co/tzvpwX5lDk
@MargaretBrisbin Congratulations!! Excited to see you in SD!
@ctitusbrown @shu251 A bit of both… but I think she meant snakemake.
The magnificent @shu251 #emojified our #OSM2020 abstract as well and it is too good not to share.
🦠🌎🦠🌍🦠🌏➡️ 🧬🧬🧬🧬🧬🧬🧬 🧬🧬🧬🧬🧬🧬 🧬🧬🧬🧬🧬 🧬🧬🧬🧬 🧬🧬🧬 🧬🧬 🧬 🧬🧬 🧬🧬🧬 🧬🧬🧬🧬 🧬🧬🧬🧬🧬 🧬🧬🧬🧬🧬🧬 🧬🧬🧬🧬🧬🧬🧬 ➡️💻🔄🐍🔄 ➡️ 🎁📊📈
#ThankyouDNAEmoji
Happy #WomenInScience Day! I am so grateful for the many amazing women who paved the way and for those who I get to work with and learn from everyday. https://t.co/crKwrhxDOx
@MtnScience @biologicalLeigh Down blanket will be perfect! Have a great trip!
@MtnScience @biologicalLeigh Flip flops for the shower! Eye mask. And I loved having my sleeping bag for extra bunk coziness. And maybe an audio book… in case you have rough seas it is nice to have entertainment that doesn’t require the use of your eyes.
We are heading to @theAGU #OSM2020!
with @blumlikeplum @microbiaki @EriPDev @shu251
@jcamthrash Going to borrow this idea… excited to check your groups posters!
@MarshMicrobe @eckerdcollege @ECMarineScience Congratulations!!
@mousquemere @Stockton_edu Congrats!!!
There are days (like today) where I wish I could duplicate myself… but then I remember the parable of Calvin’s Duplicator and reconsider. https://t.co/9N4bqPNVuY
@mmzbd Note to self: smear all manuscripts with tuna before submission.
I feel seen. https://t.co/UOknH1APOm
@oceanslebrasi @emmoxiely Will work for the opportunity to watch The West Wing ;) @emmoxiely
@grib1 @NSF_BIO Congratulations!!!! 🎉🎉
I thought I was crushing my workday since it was only 9:30.
… then I realized that the menu bar on my computer had frozen.
@mixotrophe Another classic. I PROTIST!
The main focus on my research. https://t.co/Nb3ePTxn9C https://t.co/7m4UxeLGGA
Dear auto correct, it is protistan genomes not protestant genomes.
@MargaretBrisbin Read ahead of time and just leave “XXX” in the text if I am missing something and fill it in when I get to work.
I fall easily into rabbit holes…
@JulesDeep 1. Me too! Pre-planning is a big motivator. 2. We can hot spot if it is an emergency… but it is nice to unplug. I use my time better in the absence of distraction… draconian maybe but it works 🤷
I also don’t have the internet at home which really helps me focus…
Winter morning writing setup. Anyone else write better at home than in the office? https://t.co/l5f5suGlGl
Thermal experiments are cooking in the lab with @ariannakrinos ! Thanks to the Anderson lab for their thermal block we can make our 🦠s 🥶↔︎️🥵 https://t.co/kloBPP3LUL
That feeling when you are done with a project and you are regretting your sample naming scheme… https://t.co/sabNznQ7dc
So great to see Laura present all her hard work! She crushed her first talk! @EggErin https://t.co/eZwlOdgsAY
Good food for thought in thinking about symbionts at a global level : https://t.co/wrcLGbPPCV
Methanogenic microbes in symbiosis with protists have potentially an order of magnitude higher production of CH4 than free living microbes @SymbiosisRox
Various taxa and alpha diversity match Orstein-Uhlenbeck / white noise models.
Most traits are phylogenetically linked…
Now on to considering the microbiome as a trait and considering phylogenetic relationship.
Main takeaway: microbiome from different species of ducks not impacted by flu in the same way.
Flu infection shifts 🦆 microbiome to some extent.
And— when humans pick up high pathogenic bird flu it can have high mortality (60%) #funfact
First up: bird flu. Water fowl are a huge reservoir of the flu but don’t get sick (upwards of 40% of flock infected). But they can transfer pathogens to our poultry…
Gaining a new appreciation of how amazing birds (and their microbes) are courtesy of @sarahmhird 🦆🦅🐧🐥
Great day at @uri microbiome symposium! @ariannakrinos have a great introduction to some of the EUKnique single cell data she has been working on. https://t.co/aZEr46I0gS
Eleven tips for working with large data sets https://t.co/lF1XH8dN50
Excited to see what comes of this meeting! Leaving with a lot to think about. https://t.co/T9z0f5Dj93
Great read and some good food for thought… https://t.co/awJvxC6Afh
@shu251 You know you are doing something right.
@ctitusbrown @jcamthrash HT of course to the dib-lab ;)
@jcamthrash @PatSchloss Should have seen this answer was already provided ;)
@jcamthrash Create an organization: https://t.co/1WSppK1FqC and then sign up for the academic pricing. Your lab-based work can all exist therein and lab members can easily work collaboratively.
@crispinoblong Same.
Awesome >12,000 SAGs from uncultured microbes! Nice @microbiaki https://t.co/BJGza0CdDr
Translation: it is important for the informaticians / data scientists to know about the biology of the system.
Nice point raised by speakers during Q&A: domain expertise is a crucial component of assessing the quality/biological relevance of results.
How do we deal with unknowns? How can we integrate with other fields (data science) to do rigorous statistical analyses?
Great session on multi-omics and the challenges with data integration across types (genomic–> metabolomics) #NSFmicrobiomes
@maaahge Not sure I would call that casual. 🤮
MetaEuk – sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics https://t.co/fTjzK2XzPG
#relatable, eh @microbiaki? Only added the complexity of having everyone also working on a server. https://t.co/pWPKpcQex7
@science_is_dope Have fun! Look out for the awesome @alexcr_1 :)
Ending the week off right by finally backing up some important data that is living on the HPC (thanks rclone). Bring on the weekend. https://t.co/8voyFyIYjo
@Paul_Carini Noooooooooo!!!!!!!
@kaiblin 💯
We were talking about data availability and pipeline description more than a specific tool. Old tools are good tools!
OH in class today while discussing a paper’s reproducibility issues: “This paper was published in 2014… the dark ages of bioinformatics.” 🔥🔥🔥
#burn #butnotwrong #kidsthesedays #feelingold
8 years and it’s finally out! Talk about gumption. Congrats @oceanslebrasi !! https://t.co/b24NkPNU5t
@MetaboMcP @WHOI @shu251 @markiebeth 👋
@sochunese @carabonate I cannot delete my downloads. I just can’t.
Happy #ComingOutDay! 🏳️🌈♥️🌞⭐️🍏🐳🍇🌈
Blessed to be living my best life with my wife @oceanslebrasi !
I am out and have been for for over a decade (yikes!) I feel privileged to live in a time and community where I am safe to live openly. https://t.co/yJdPJDdTTD
We are covering assembly today in Environmental Bioinformatics! And we will be starting out with sentence assembly courtesy of @ctitusbrown shotgunator.
Basically magnetic poetry but with sentence chunks!
@goodnesglaciers Agreed.
@MarshMicrobe ♥️♥️
This: https://t.co/hPst8wIV21
It is so good to read an account of the hearing from a reporter from the LGBTQ community. https://t.co/bw5KcNIfsg
@goodnesglaciers https://t.co/hPst8wIV21 and Gessen’s recent piece.
@aeawhite So true. It is just unsettling to see (what I consider to be) such a basic right come up in the high courts.
I naively thought we were beyond this. Showdown Over LGBTQ Employment Rights Hits Supreme Court https://t.co/JIKN5ifdOv
@ctitusbrown @JulesDeep @swcarpentry @WHOI @SciPyTip @shu251 Seconding! You can do it!
@mixotrophe @rmbundy #ifeelseen
@jvanderhoop @digitalFlaneuse My face is a face. But my hair is “craftsman, artisan, journeyman, artificer: a skilled worker who practices some trade or handicraft.”
Can’t say I disagree. https://t.co/lCN0FbJExm
@ariannakrinos Yes… Somehow it never came up!
From a physicist discovering that biology doesn’t really do first principles. https://t.co/ECwq36RGlv
Bonus: she also learned about DNA translation and what a codon is.
OH from @oceanslebrasi while she beta tests the python homework for my class.
“This is a fun homework!” 🥰 https://t.co/WCqVLakdSt
I am using Slack for the class I am currently teaching.
One nice feature that I have found is the anonymous poll: it is super easy to throw up a quick poll and get answers anonymously (which hopefully leads to more honest answers). https://t.co/5MvGJtN3Lr
@coccosNdiatoms So cool! Congratulations!!!
@rabernat @pangeo_data Working on big omics data in the ocean setting and trying to develop scalable pipelines e.g: https://t.co/cY9h7J8IUh
@rabernat @pangeo_data 🙋🏻♀️
Watch out #OceanObs19 . The dyanmic-🏳️🌈-🌊-🥽-duo are re-united. https://t.co/6Vl1vILG5S
@hollybik @universityofga Amazing news!! What a cool joint appointment. Congratulations! 🍾
@jvanderhoop 🙅🏻♀️
Alright, everyone. What was your #BioinformaticsRiteOfPasssage? I know we all have them. https://t.co/37c6ZMZzNV
@subsurface_life @marinebugs Ah, behind the times. I haven’t been doing rRNA stuff for a while ;)
My first real experience with bioinformatics was trying to install Arb back in 2010 while being mentored by @marinebugs.
It didn’t take minutes. It wouldn’t install on my Mac. I had to install ubuntu on a partitioned harddrive.
The future is here. https://t.co/zgFCuRgNQ6
@goodnesglaciers @rabernat @hl_ford ARTS AND CRAFTS TIME! https://t.co/Wt2roe9Rxt
Awesome seeing plankton covered by @nytimes ! Lava leads to massive phytoplankton bloom– but not by the mechanism you might suspect.
🌋🌊🦠
Also check the paper out in @sciencemagazine : https://t.co/nx8IaC2cg2
Great job Sam Wilson, Nick Hawco, et al! https://t.co/6UZSfNvS8m
@tompc35 Well, flash forward a few weeks and I have decided to go with GitHub Classrooms. It is much nicer than I thought! Thanks for the poke in that direction.
Any microbe people looking for a postdoc? Awesome opportunity to work with awesome people! https://t.co/mnmNP6adJ9
@crispinoblong This has always been my go-to pastry… everything makes sense now.
@algoriphagus His smile is the best thing on my Twitter feed today! Hope he continues to have fun and makes it to day 2!
Starting new projects got me feelin’ like…
@shu251 @ariannakrinos https://t.co/eLYOjEVe1w
@shfo @danrothenberg Also an interesting idea! I will check it out.
Regarding naked mole rats: I am solidly on #teamcute.
Nice story @Pien_Huang! https://t.co/NOsbRptY1V
@kycl4rk Valid point! Less concerned with cheating and more students feeling judged (?)
@tompc35 Good to know! I will look more closely but it seemed a bit constraining at first blush.
@danrothenberg Nice! Thanks, do you have them share it as a PR against the original repo? I would rather not have to wrangle multiple links from students // have to figure out time stamps. I like having them lock in the time with a PR.
Current plan is to create a repo for each lesson, have students clone and download. Create a fork on their private GitHub account, and then make a PR to submit. But, worried about privacy issues.
Question for anyone who has taught a course with homeworks etc. hosted via GitHub. How did you handle the ’submission of homework such that students could not see each others homework?
Not opposed to it– but trying to work without GitHub classroom.
Work with people whose neuroses align well with your own.
@mousquemere … that has to be a parody account. Right? … Right!!?
@UNHplanktonlab 👋… 🌊
So proud of our (@microbiaki) @WHOI Summer Student Fellow Laura Blum! Not only did she become a dangerous #python data analyst this summer, but she has made some awesome #metagenomic insights in marine N-cycling and created a beautiful research project. https://t.co/r2ekVZNeBo
Here’s to another 30 years at HOT– congratulations @aeawhite !! https://t.co/RPD2JjbjIE
@shu251 @JulesDeep @WHOI @mousquemere @astro_microbe Huber lab is officially the most photogenic 😍
@ariannakrinos Unsurprisingly, there are a few more steps involved. But @ariannakrinos walks you through them and even includes options for different windows terminal emulators. https://t.co/VUzsPwsJkD
.@ariannakrinos is up on the lab website with a follow up blog post (to mine a few months ago) about how to connect to a remote Jupyter Notebook if you don’t have a native terminal (i.e. you are on a PC running windows) https://t.co/beb3xOy3MI
Watson Lab taking cover at @WHOI during 🌪 warning. Thanks @JulesDeep for keeping us safe!
@pangeo_data @WHOI Complete with nice example running in @mybinderteam https://t.co/23xYxgv2he
Great talk and tutorial on @pangeo_data by Scott Henderson for the @whoi data science lecture series. https://t.co/FKIyhfysQV
@mousquemere I mean… it is always the Russians. #mytinhatkeepsmesafe https://t.co/6vBLsROyt3
Laura Blum of @Middlebury gave a fantastic presentation today on her summer research! @microbiaki and I are so lucky to be working with her this summer! https://t.co/xjGEEPWvki
I am excited to welcome Arianna Krinos (@ariannakrinos) to my lab! Arianna is starting as a joint program student working with Mick Follows and myself.
She is already up and pipetting away – setting up some single cell transcriptome experiments. https://t.co/6bwYFlSsvE
@redpenblackpen My hypothesis is the only way I could have been looking at my schedule.
@shu251 Fozzy had this problem too
#PrideMonth and National Oceans month overlap… Coincidence? I think not.
A small throwback to celebrating #pride on the #kilomoana.
@500QueerSci #LGBTinSTEM 🏳️🌈🌊 https://t.co/VzB0HzfVkh
Note the various facial expressions after >24 hr ops.
We had a killer zoo crew. https://t.co/o6rluDjqGl
Ok hive brain: what is this creature? Collected from surface water hand net tow at station Aloha. Colonial ciliate is our current guess.
🎇☀️💫🌼💠 https://t.co/rriIBuOPpX
Larval flatfish (from our last tow).
Microbes and protists still have my heart but I have to admit this cruise has made me appreciate the “big” things in the ocean. https://t.co/2iPU7btoiM
@DevBizInfoGuy @aeawhite @unols Loving the ocean Star trek linkage.
Trichodesmium (a nitrogen fixer) is really dominating the plankton tows at Station Aloha right now. Puffs, rafts, and filaments galore! 🔬📸 @aeawhite #nsffunded #csw2019 @unols https://t.co/Jfglzwoyvx
Blue button and tricho filaments from a net tow 📸@aeawhite #nsffunded #csw2019 @unols https://t.co/EGFIYI6ABK
Two MOCNESS tows in one day! Team Zoo still going strong. #NSFFunded #csw2019 #scientistselfie https://t.co/yIejGxM6R3
As someone who has mostly worked on phytoplankton and microbes at Station Aloha my filters are usually blank. This is madness… Right @shu251 ?
#csw2019 update from the higher trophic level team:
The MOCNESS tows are an immense amount of work but worth the effort. Check out the biomass on this filter! 🐟🐡🐟🦑🦀
#csw2019 #nsffunded @unols https://t.co/TLXxVGyEzY
It is used to collect (what I consider to be) large plankton (e.g. zooplankton) and even some fish.
MOCNESS equals Multiple Opening/Closing Net and Environmental Sensing System
Usually on cruises I am CTD bound… Waiting for water. During #csw2019 I am working with something totally new: meet the MOCNESS. #NSFFunded https://t.co/yttsJsTZIC
And we are off to Station Aloha! Streaming out of Honolulu #NSFFunded #csw2019 @unols https://t.co/dJZoW11fDh
@Lubchansky @caleweissman @kylefrischkorn what is your stance on this?
@Lubchansky @caleweissman Um… You mean 60%?
Team higher trophic level (HTL) is getting their workout on. https://t.co/VfPL9Owt2H
Mobilization had commenced! Time to move our labs to the ship… 🔬📦💪
#NSFfunded #CSW2019 https://t.co/fqqSYg1rct
Effect of de novo transcriptome assembly on transcript quantification
“To circumvent these issues, it is advisable to estimate the abundance on component-level rather than for individual transcript.”
We are in the midst of our first in person planning meeting for the chief scientist training cruise! Leaving Saturday! Follow along via our blog: https://t.co/BUNxpmtzuu
#CSW2019 #NSFfunded @unols https://t.co/DobTAGuCX5
@microbiaki @rec3141 Me too please!
@HilaryPalevsky Thank you for sharing your story– it is great having more examples of queer couples in science. And congratulations on your new position!
Beautiful perspective on the #TwoBodyProblem, solution, and intermediate struggles for one #LGBTQinSTEM couple. 🏳️🌈 https://t.co/OVfpdeFere
@rec3141 That is the worst. I am so sorry!
@rec3141 Woah. Was that all your data?
Lol. Was trying to come up with a vent name and drew a blank…
@shu251
@wildthang1276 @WHOI @AmyApprill @RayDalio Congratulations!!
@rocksnruns @NagissaM @BSteve1120 Amazing!
@rocksnruns @NagissaM Do you have a photo of the setup? Because… this sounds amazing.
@smith8272 😅 Too true.
Knowing one’s $PATH is important both in life and in compute. https://t.co/AMNFTB0heK
@limnoliver 🙄
@MEPjoe Lessons learned…
This morning I decided to wear a white shirt.
This morning I also decided to leave my coffee mug on my roof as I drove to work.
These decisions were in direct opposition to each other.
Recall this joyous thread? @shu251 just finished a blog post detailing lessons learned in getting R working nicely in #conda environments. #rstats
Check it out: https://t.co/TwyTgUc05L https://t.co/TGc7FzNDCE
@JulesDeep It is kind of an interesting ethical issue: self- plagiarism…
@jongsanders Yaaassss.
Mine is:
“Phytoplankton do about half of global primary production work and are important”
Does anyone else feel like their papers start with some variation of the same sentence?
Exciting day! Received some starter algal cultures in the mail courtesy of the @DyhrmanLab. 🦠⚡️💡🌊
Moment captured by @shu251. https://t.co/HeUb9zHONH
@JulesDeep @HamiltonMusical So fun! Enjoy!!
@RebeccaRHelm @URIGSO @WHOI @universityofri Thank you @RebeccaRHelm 😊
Excited to head to @URIGSO tomorrow to talk protists and omics! https://t.co/obx8JYdcTu
Come hear from @rec3141 today in Smith about some awesome work he has been doing on Arctic Microbial communities! https://t.co/H7oNdI7dyT
@WoodpointIrwin Hm, maybe it isn’t related to the client then. The truly frustrating thing is that even though I have marked the emails as not spam the emails from those senders still go to spam. 🙄
Excited to give summonse at the Parsons Lab at MIT today! 🦠🧬 https://t.co/qznNPvUftC
Recently switched to a new email client (Airmail) and discovered yesterday that a non-insignificant number of important emails have been going to my spam. https://t.co/Vm4DbL02w2
Congratulations Gwenn!! https://t.co/g8FHLLN1hA
@MariannaFoos Hopefully it helps to quell the coming storm…
@hollybik Oh! Good thought! I will keep privacy in mind!
@monsterbashseq @jrossibarra @whitehead_ja Awesome! Thank you @monsterbashseq ! These are great!
@rmflight Nice! Thank you for the example!
See start here: https://t.co/VahUqPsScE
I will be transitioning to a lab of > 1 this summer (🎉)! I am looking to set up a Lab Wiki. Does anyone have any good examples? #newPI
“Bouman’s Wikipedia page was once flagged for deletion because the site’s standards found that she was “not notable” enough. Now it carries a paragraph detailing her viral story and the harassment that followed… ” https://t.co/ZL6XlAb8T0
Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems https://t.co/ozufm0uscr
@sinkingdiatom My work life colliding work my childhood park.
@ctitusbrown @shu251 TGIF and all that.
@AstrobioMike @shu251 Yes. I think that it exports at too fine a scale– but by modifying the required versions it will install and sort of work.
In this particular case, though, it was an issue with the wrong path for the ir kernel being used in the kernelspec.
@shu251 At any rate. This is to say… keep an eye out for an EPIC blog post on this whole saga from @shu251 about how to streamline R workflows and your life. https://t.co/0iiXMvshWN
@shu251 That … didn’t work.
What eventually did work was removing an aberrant .local copy of the irkernel that was showing up as the resource_dir for @shu251.
@shu251 Harriet wanted to remove everything (because destruction usually fixes stuff like this) https://t.co/BkNlFzEYg2
@shu251 I mean, we figured that this should have fixed the problem.
@shu251 The truly perplexing part was that it worked for me with my conda environment… but not for @shu251
As in I exported my conda environment to a yaml file and Sarah imported it. Still no working. https://t.co/ynFnRJNOKc
After months of struggle @shu251 and I just got IRkernel to work with Jupyter notebooks through a remote server. https://t.co/wv0Zh00Zc6
@JulesDeep Oh no! Hopefully she feels better and this is the end of sickness in your family.
Twitter knows me so well– this autogenerated is exactly what I wanted to say:
“OMG, I have 1,000 followers! Thank you. Think I’ll make it to 10,000?”
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing https://t.co/6Rpbie7IVY Nice perspective from @MakASaito et al. https://t.co/FvASWbxjjC
@jvanderhoop Maybe we should make bra composting a thing 🌱
And here I thought we were limited to bra burning… 🤷♀️ https://t.co/F3ryL9CGLl
Feeling gratitude this morning for the awesome @whoi IS team that keeps our cluster up and running. https://t.co/p99SWkjHkA
@kylefrischkorn Excited to see you back stateside!
My research is a little bit of time pressure. https://t.co/nE6RDfSPGy
@phantomBugs @NagissaM @WHOI Big ol’ protist… Bet @shu251 knows.
This is great for any oceanographers looking to make the switch from Matlab into an open language! https://t.co/o8WekqBUE1
@ekbors @WHOI @noaaocean @Ecol_Evol @herre_san Awesome photo! Congratulations!
@byuhobbes Also happy birthday!
@byuhobbes Sir, you are doing this parenting thing right.
@byuhobbes Is this a direct quote from your F1s?
@luizirber As an after thought: worked like a charm!
Super easy to configure remotely and synced really quickly.
@TrevorABranch 11
@JulesDeep @LizKuj @WHOI @AmyApprill @RadicalMicrobe We are well on our way thanks to the amazing mentorship you all provide!
@StevenJRobbins Good to know!
@ctitusbrown @subsurface_life Kids are a definite level up in difficulty.
@subsurface_life Woah! That is crazy. I flew for this invited talk– so backing out didn’t seem like an option. Loved meeting everyone– just hoping I didn’t act as a disease vector 😷
@NagissaM That is totally a #newPI achievement!
@saltyscientist @HeatherNicoPage @Scripps_Ocean @HopkinsMarine @monsterbashseq @microbesatsea @jongsanders @clogan_sci @Natalya_Gallo @natmillan13 @LaurenLinsmayer @le_shipp @SarahMackAttack @jwfiedler @plankt0nista @OmeraMatoo Love this idea! I will dig around and see if anything already exists. Are you lumping bio oce into maine biology?
Just gave a seminar while hyped up on DayQuil. #newPI achievement unlocked?
@byuhobbes See example in the megahit rule here: I https://t.co/xt4DPjK2XX I bet you could use glob in the function to generate the lists.
@byuhobbes Hm, didn’t use glob but found a similar solution with lambda functions+wildcards.
@luizirber Will try right now! Thanks Luiz!
This should be easier than it is. 🙄
#Mondays
What is the current best option for downloading files from GoogleDrive with wget/curl?
Tried several from StackOverflow googling to no success.
@drynamics 1% –> 20% is a bit of a reach…
#thanksSnakemake for queuing those 6000 slurm jobs.
Cracked the top 10 users on the HPC. #winning
@byuhobbes ALLLLLL ZEEE CPUS
That feeling when you are the first to realize that the HPC is back on after scheduled maintenance #submitallthejobs #queuedomination https://t.co/yj75zUQ8I4
@Paul_Carini @subsurface_life @Thiotricks Awesome! I might try it out once I have a computer that doesn’t channel the poltergeist as soon as it is connected to an external monitor.
@Paul_Carini @subsurface_life @Thiotricks Is one of your monitors vertical? If so, do you like it? And what do you do on it?
DMs I get from @oceanslebrasi
#sphericalcow 🐄➗🐮=🍥 https://t.co/DsTkOzdt0v
Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics https://t.co/jk0cFip453 From @LouieWurch with @DyhrmanLab @kylefrischkorn et al. https://t.co/TkxqDywj3p
@hvmoeller It helps so much.
@RuvinskyIlya @ErichMSchwarz Man, good perspective!
@rmbundy It is a pretty great group!
@aeawhite Best journal out there! I bet it’s impact factor is out of this world 💫🌏
@ca_durkin That is encouraging!! Thanks for your honesty and humor :)
@ekbors @goodnesglaciers @jvanderhoop Come back and take a walk with me. #LoveEelPond
@jongsanders @shu251 sound familiar?
@Paul_Carini Solidarity, my friend.
@jvanderhoop 🙌🙏👊
@subsurface_life Coincidentally that song was my January jam. Someone should make an academic cover. @MoKrobial @subsurface_life
My first big grant proposal got rejected today, and I feel like I just joined “the club”.
Going to go get a coffee now. #ontothenext
@kendraturk @StevenJRobbins Woops– answered a fictitious question! Thanks @kendraturk!
@StevenJRobbins The prymnesiophyte and UCYN-a come to mind. Or diatom - diazotroph associations.
I know it doesn’t really matter– but what extension do you use for YAML files?
Algae suggest eukaryotes get many gifts of bacteria DNA https://t.co/R8dueqehms
@ColinJCarlson @JBYoder This explains why I was debating between ocean science and astro as an undergrad. 🌊🌖🏳️🌈
And for those microbially-minded folk, @microbiaki and I are looking for an SSF interested in getting some computational experience: https://t.co/0SYDqvOLYX
Do you know an undergrad interested in marine science? Tell them to apply to @WHOI Summer Student Fellowship (SSF): https://t.co/JZ44D6kwEr
@jcamthrash Meta.
Keep an eye out for @CHONPSoup, @AHoarfrost, Gwenn Hennon, and me as #waterboss.
A day late for #CTDAppreciationDay but can’t help but share this awesome video made by @ca_durkin and Evan Howard explaining how scientists use CTDs.
Nice thread and good things to remember! https://t.co/eZeijEkY5l
@jvanderhoop @subsurface_life Forgot about that @jvanderhoop! #rbg is a total survivor– just like her namesake.
@subsurface_life One of our layers (more robust than your lady it sounds like) had a huge puncture wound like that from a coyote attack. We left it open and fed her a high calorie/fat diet (peanut butter mixed with egg yolk) and kept her in a box in a warm spot for a few days. She survived!
#GilletsJaunes welcoming us to Brittany! No tolls today. https://t.co/2mx3kWD8bJ
@mousquemere Great thread– thank you! And wonderful extended metaphor with what my favorite childhood book.
And while you are at it checkout our accompanying commentary piece on reproducibility and the value in reanalysis: https://t.co/keO2jtagvC @monsterbashseq @ctitusbrown
Not everyone can say that their first first-author paper won a prize! Congratulations @monsterbashseq!
Check out the paper here: https://t.co/O76xUlQYbh And a nice announcement on the ICG13 Prize here: https://t.co/Z35ldCYu6c https://t.co/w9yieuj5ug
Binning microbial genomes using deep learning https://t.co/aIkErWNvuT
“you are a smart woman and have made the right decision with your life”
Sometimes a word of encouragement from a 5th grader is just what you need. Thank you!
#TuesdayMotivation @SkypeScientist https://t.co/Hb1gTu2HGA
Outreach Events Engage Queer and Transgender Youth in STEM https://t.co/tM8Za6CEIv
@subsurface_life And out postdocs and faculty! Also advertising the LGBTQ meetups at meetings.
@jvanderhoop Maybe Santa will give you a completed review in your stocking!
A timely and important discussion of what it is like being not white on #CapeCod*. Worth a listen : https://t.co/Jz3F2OhKUn Thank you @Pien_Huang, @sarah_mizes_tan, Dr. Khanh Dinh, and Mindy Todd.
*2010 census estimates 92.7% white in Barnstable County.
Nice coverage of the marine mammal rescue team’s 20th anniversary including @WHOI Michael Moore. https://t.co/fZQvk49rK8
Recent work with @SpongeSymbiont and @LizKuj posted on @biorxiv_micrbio : A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae https://t.co/QwpV7YUfYf Comments are welcome! https://t.co/e3Ok6jVbjl
Seasonality of Freshwater in the East Greenland Current System from @oceanslebrasi @fstraneo et al. #OSNAP https://t.co/WuccF9oIft https://t.co/tSh22zZGGH
@sinkingdiatom I have similar questions about this paper… I am leaning towards no.
@mmzbd A whole other level of terrifying right there…
I cannot say that I am surprised by this news, but I am deeply concerned. To apply CRISPR to human embryos and then implant those embryos is completely reckless and unethical. I feel for the children of this arrogant experiment. https://t.co/qxwwms52hI
PSA: If you find yourself trying to figure out the best way convert a fasta file into an excel spreadsheet…
STOP.
Nothing good will come of this.
[except a massive excel file that will crash your reviewer’s computer]
Real life example of why labeling chemicals in the lab is important:
@jvanderhoop roasted carrots and chickpeas in my kitchen topping them with what she though was paprika. It was an unlabeled 90K HU cayenne pepper. Makes for a spicy lunch. 🔥🔥🔥
A reminder to those applying to PhD / graduate programs: if you find the application costs burdensome, most schools have a fee waiver program. For example: https://t.co/mD5g5vNmZT #phdchat
@sochunese 🧦 all the way.
Day 3 post-it brain storm session trying to plan out the next big biogeotraces-like oceanographic iniative. Name TBD. https://t.co/obwjFAstqg
Or inter-calibration?
Thinking of the oceanic context in particular – but open to anything! Human #microbiome? Soil community?
Has anyone heard of / participated in an effort to nail down metagenomic/metatranscriptomic inter-comparability?
@ctitusbrown @JulesDeep Getting interviewed by @neiltyson is a pretty high bar.
@JulesDeep You are officially too cool.
“Are there phytoplankton in my shower?”
No, probably not… though I can’t say that I have checked myself.
Thanks @SkypeScientist for the great start to my Monday.
@subsurface_life @SantoroLab Poor protists 😜
@baleakanta 😂 probably.
“We found that GRE [quantitative] scores did not predict PhD completion for women in STEM programs and that, unexpectedly, GRE Q scores were higher for men who left than for those who completed PhDs.” https://t.co/wU4rcESQR5 https://t.co/Acb2STI8rM
Proud to be one of the 1,400+ scientists to sign this letter. #WontBeErased https://t.co/HUIT110jG3 https://t.co/CgJStTfplF
@jvanderhoop Beast mode. You got this!
I am heartbroken to learn of the passing of Ruth Gates. She was a fantastic coral scientist, a great mentor, and a champion for women in STEM. I admired the fire she brought to scientific debates and her willingness to be a bit of a scientific maverick. https://t.co/9f8xizRVzf
@JulesDeep @WHOI Right? I don’t know. I was writing from home this am. Also in my basement… And wondering if I have been transported back to Arkansas.
@ctitusbrown Thanks, we are… I thought I left the Midwest but I guess not.
Waterspout in the cape cod canal? And now I am sitting in the basement… https://t.co/NAsppY1LdT
Way to go @monsterbashseq ! https://t.co/iLQq6zwfjP
@drmikeographer I use a combination of omic approaches to get an idea of what drives phytoplankton (microscopic plants) to bloom in the ocean. 🔬🦠🌱🌊
So true– the help I have gotten on GitHub/stack overflow far exceeds any help I got from Microsoft Excel developers.
Open data science tools exist– and they are developed by nice people @juliesquid
“your study system is not unique when it comes to data” @juliesquid
Every scientist: “… But my system…” https://t.co/Kn3gHqRdpe
Amazing Star Wars analogies with great illustrations: scientists are like Luke stuck in a bog of data analysis problems. Yoda is the savior: open and reproducible data science tools.
Special biology seminar today by @juliesquid on open science practices in environmental science.
@drmikeographer Hi! This is an awesome thread to follow!
Had a great chat with a group of 11th graders at Aerospace/Hydrospace Engineering and Physical Sciences School in Bridgeport! They had great questions about diatoms and the ocean. Thanks @SkypeScientist for matching us!
This seemed appropriate give the news of the day:
Non-Binary in Nature “… to make an argument that someone ought to only identify as female or male because it’s ‘only natural’ …is futile.” — Thalia Patrinos https://t.co/aPMLq1uorb https://t.co/SdTidpK2dx
Also, Biology is not the only department @WHOI hiring. There are calls across all 5 departments: https://t.co/vKMdde0Smk
My department @WHOI is hiring a tenure-track scientist –we are particularly interested in someone who specializes in #zooplankton ecology. Come joint us! https://t.co/gMtTm80W89
@WholeFoods Can you point me to the FDA regulations? I am just confused as this was not an issue for us in CA at local coops. Thank you!
@SymbiosisRox @FulweilerLab Did you see their reply to me? Claiming FDA reg which would argue that it was federally mandated (which makes me question why it wasn’t an issue at our CoOp in CA).
@FulweilerLab Right? We brought containers for a bulk food resupply and double checked with an employee who said it was fine only to find out at the register that it wasn’t (almost were charged extra). 🙄
Hey @WholeFoods, not allowing people to use their own containers in the bulk foods section minimizes the positive environmental impact of buying in bulk (especially when the only containers provided near the bulk section are plastic).
Happy #NationalComingOutDay! Everyday I bring my authentic self to work 🏳️🌈 It’s sometimes exhausting to be #OutInSTEM, but I know that I am privilaged to work somewhere that respects me and that my visibility might make it easier for some young queer scientst to live their truth. https://t.co/nqoFpMdFGt
@jongsanders “Ballistic landing” does not sound good.
@shu251 Look familiar @jvanderhoop @sochunese @goodnesglaciers @donald_glacier @oceanslebrasi ?
Talking to the elderly shouldn’t include baby talk — it’s not only condescending, it can cause cognitive harm
Nice write-up on @anna_corwin research on negative outcomes of elderspeak: https://t.co/KM2wM47Q1Y
@jongsanders This makes her the new Queen of Nordic Countries, right?
@hvmoeller Ah, good point– hadn’t looked at larger items yet but I can imagine that shipping a Percival from someone on eBay would be a headache.
@Paul_Carini Oh! Great tip! Thank you!
@jongsanders @pgirguis Awesome! Yes, planning to get a new energy efficient -80… I can imagine that used -80s might run into problems sooner rather than later.
@subsurface_life Good to know! Yes, I was thinking of smaller items that are relatively basic. I am also of the opinion that certain things are better older.
Just discovered eBay as an option for second-hand scientific equipment purchases. Any sage advice/warnings before I jump in? #newPI
@lolailolei Jealous! Take her to do something fun!
Picking up this Arctic explorer in 2 days!
Fun fact: combined we spent 12 weeks in the field in 2018, covering both the Arctic and Antarctic circles. https://t.co/bzzqCdQVvF
Exciting #diatom paper this morning: Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom https://t.co/sfJVyQD2PO @andreweallen @MicrobialOcean @Scripps_Ocean
@goodnesglaciers @robynkonichiwa @ekbors @jvanderhoop @oceanslebrasi https://t.co/XZv2uIB2QK
@Earthling1024e8 @fairvote 🙌🙌🙌
@pjacock Very interesting thread! Thank you for linking to it.
@pmberube @ctitusbrown @WHOI Thank you! I will drop you a line next time I am up at MIT! It would be great to catch up.
“The invocation using the parameter”-max_target_seqs 1” simply returns the first good hit found in the database, not the best hit as one would assume.”
A pretty important distinction. https://t.co/nebCfTPftC
Are email clients worth it? If yes, what do you use?
(I see an increasingly large mountain of emails in my future. #newPI)
@ctitusbrown @WHOI Thank you! I have a feeling we will be seeing each other as part of the Davis-Woods Hole exchange program ;)
@JulesDeep Couldn’t ask for a better next door lab!
@goodnesglaciers @WHOI Always the best gifs. @goodnesglaciers
Happy to announce that I have officially started as an Assistant Scientist @WHOI. Excited for this next step! #newpi 🌊👩🔬🔬 https://t.co/PxOW1cSmRL
@goodnesglaciers @DrBrookeMedley @oceanslebrasi @HilaryPalevsky Great idea! There are certainly unique challenges associated with remote locations.
If you don’t already– you should go follow @oceanslebrasi as she tweets (daily) from an #osnap cruise off of Greenland, where the weather has been pretty wild. 💨🌊 https://t.co/syUucMmSdo
Colony formation in Phaeocystis antarctica: connecting molecular mechanisms with iron biogeochemistry https://t.co/jYimBEXjNO
The idea for it was planted by the ingenious @tracykteal, and we had time for it because bad weather grounded our flights out of McMurdo for a few days.
Check out this Q&A I did with @j_perkel for @nature about leading a @thecarpentries course in Antarctica. #all7continents https://t.co/Yej9xeGuHG
@SymbiosisRox @jongsanders @JonPuritz @KarthikGeomicro Planning to try it out for my next project. Will let you know how it goes!
@rejectedbanana These trading cards are the best.
@jongsanders The PYTHONPATH struggles are real.
@pgirguis So sorry, Pete! I will keep your family in my thoughts.
@IBJIYONGI @gates_mcfadden This combination makes me so happy! 👩🏾🔬x🖖
… it felt particularly hot during last night’s surf session. @CoastalLudka called it! https://t.co/HDVLe7ULi4
Prospective graduate students, take heed:
Choosing a lab is a big decision.
Of course it varies by discipline, but I would argue that the lab culture and your relationship with your advisor far outweigh the graduate program or school as a whole. https://t.co/n88xzpn5FR
TFW shifting the font size in your proposal from Times New Roman 12 to 11 saves you 1.5 pages. @sophclayt @NaomiMarcil https://t.co/ovmphUd4B5
@goodnesglaciers @maaahge @donald_glacier @fstraneo @Scripps_Ocean Yep. @goodnesglaciers holds the #title of #hashtagmaster.
+1 for #bergybits2018 #dischargedetectives #fabfjords2018
@jongsanders @shu251 @DyhrmanLab All the cool kids are doing it.
@maaahge @donald_glacier @fstraneo @Scripps_Ocean You should consult the #hashtagpro: @goodnesglaciers
You won’t believe what protists are doing in the dark depths of the ocean: https://t.co/AJZP8nji0t
#buzzfeedyourscience https://t.co/DucNiL6pAt
@kylefrischkorn @ENS_ULM @TaraExpeditions Congratulations!!! So excited to see what you do and to come visit you en France 🍷🥐
A thoughtful essay on the morality of bringing a child into a broken world:
“My partner and I had, in our selfishness, doomed our daughter to life on a dystopian planet, and I could see no way to shield her from the future.”
A bit late to the game but joining the ranks of #ImmodestWomen with my wife @oceanslebrasi. Partially spurred by this type of thing. https://t.co/b29EGE9KeC
Anyone have in situ evidence for a decrease in diatoms over the last decade or so? https://t.co/hTPyHZDsrz
Congratulations to @kylefrischkorn for his amazing defense of his thesis on the interactions of #Trichodesmium and its #microbiome! Clear, compelling, and beautifully put together– making #TeamDyhrman proud near and far. https://t.co/2At8CPIKK1
@dohnemus @UGA_MarineSci @SkIOinSavannah Congratulations!!!
@saltyscientist @jongsanders I officially want to work @bonappetit – they all seem so cool.
@jongsanders I have a serious crush on Brad.
@dgmacarthur @hollybik @hollybik – I think you should implement this in the next #Phinch release.
@MEPjoe @monsterbashseq This sounds like a craft project that needs to be done.
@MEPjoe @monsterbashseq Maybe a keychain sized one!
@rejectedbanana … have you gone through TSA with those? I can imagine they might concern some people.
@hollybik @rejectedbanana @monsterbashseq Such a good idea!
@ctitusbrown Yes, this is v. true. I think @karen_word put it well– you have to figure out how to push yourself towards a happy medium.
@lydee This is an awesome way to communicate science!
I need to hop on this train… and figure out something I can bring around with me that won’t die in my backpack.
Things carried around to enhance #scicomm: https://t.co/pGwFwnw4xr
Balancing pride and modesty when talking with colleagues and people outside of your field is key– but finding that balance is not straightforward.
Can you come up with a prop that would help in the communication of your science that you can carry around and show people?
@monsterbashseq apparently carries around an old nanopore or hiseq cell
“Serial dilution” strategy to get you to a perfect elevator pitch? 30 mins –> 10 mins –> 3 mins –> 30 secs @byuhobbes ;)
And now, of course, we are on to the oh so dreaded “Elevator Pitch”…
How on earth do you do this well?
Ultimately, marketing is about empathy and being able to translate your sci to people’s interests and needs.
Science, not unlike all other aspects of life, comes down to human relationships.
One key point he highlighted on slide 1 was that beyond having a good product (your science) it is essential to be authentic. 🙌
Today in lab meeting @byuhobbes is talking about “Marketing yourself as a scientist.”
@betatim @ctitusbrown @monsterbashseq @biorxivpreprint Well, today I learned (TIL) the meaning of “TIL” :)
@allysauris @FulweilerLab @rleonzay @rmbundy @shu251 🙋♀️
@wildthang1276 @WHOI @eapsMIT Did you get your blue marble? 🌍
The paper on the re-assembly of the 678 transcriptomes from the MMETSP is out on @biorxivpreprint! Check out the increased kmer content in the assemblies. Congrats @monsterbashseq! https://t.co/zkShaiJyjJ https://t.co/5zKmOLxQvG
@luizirber Brilliant! Another use for my lego mini-me @alexcr_1 :)
@kylefrischkorn That is gorgeous. I will be putting in my orders soon.
@jongsanders Pack o’ pachyderms
At the @qiime2 developer’s workshop this week at UCSD. Loving the inclusion of detailed provenance information for all workflows. Including downloadable citation information so that all software used gets cited! https://t.co/cYvBF24GOO
Life lessons from @ctitusbrown lab meeting video conferencing setup: when in doubt, turn it off and turn it back on again.
@pgirguis @hormiga That is awesome! Hoping we will follow suit.
Friends like @camille_codon not only can help you fix your poorly written code but will help you install a trailer hitch on your Subaru. 🤓💪🔧🚗❤️ https://t.co/5PZrPuhb9n
@sochunese I have a feeling that it was a path issue… so strange though! That shouldn’t happen.
@sochunese To look at your $PATH you can just type echo $PATH – it will list everywhere your computer is looking for your command that you just typed.
@sochunese Once you have it you can just type ‘conda install blah blah’– and it installs much like pip. It is a nice way to keep everything straight.
@sochunese Are you using Anaconda? If not, I think you should. It makes module install a breeze. https://t.co/P08u8qQCRD
@sochunese Is it still in your $PATH? (Look at your .bashrc file in ~)
@jongsanders @Cornell Congrats!!!
@WildCora @Wormcam The end is nigh!
“It seems like the uncertainty has been underplayed in the media, and the implications blown out of proportion, which is unfortunate,” @oceanslebrasi says.
Relax, The Day After Tomorrow isn’t going to happen, like, tomorrow https://t.co/41t2nOo4rK via @grist
Exciting news! Funding given to @WHOI to support exploration of the under-studied #OceanTwilightZone https://t.co/DqHkHrviG2
@jongsanders Sign me up!!!
Shared with me by @monsterbashseq. Quite appropriate. https://t.co/ojG9kex5oD
Excited to watch Heidi Sosik today at #TED2018 : https://t.co/6nblUOWSeu
@JulesDeep Much more fun to read… IMO. Bonus points for a good pic or two!
@hqtrivia Flyamoeba
@oceanslebrasi Phytoplankton are the best.
@JulesDeep @WHOI Woah! Look at that awesome ship!
Came into my office today to find a #LEGO version of my future lab space complete with Ada Lovelace poster and a view of Eel Pond! Thank you to the amazing and crafty @alexcr_1 👩🔬🔬🌊❤️ https://t.co/vNzQpJadoC
Shredding with the @fstraneo lab postdocs #fieldworkrevenge #birthdayshred #izi #CesarChavez https://t.co/HX2KIq7xDR
@shu251 🙄
@jamesrco 🔥🔥🔥
Excited to be back at @WHOI to give a talk for the Geodynamics Seminar series on The Chemistry of the Ocean Microbiome. A class I wish I could have taken! https://t.co/ULQRaPkWpJ https://t.co/Z8qwGdY4fh
Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms https://t.co/ocCdvAXRs8
@kylefrischkorn Ah, sweet memories.
I made great connections at #EcoDAS with people across both #limnology and #oceanography– it is a nice opportunity to meet people ‘across the salty divide’. I have also gotten the opportunity to participate in several interesting papers because of it! So, apply! https://t.co/QrbqeY7DPs
North Atlantic Right Whales Are Near Extinction. We Can Avert It.
@jvanderhoop spreading the good word about the negative energetic consequences of entanglement in fishing gear: “[like] a human swimming long distances in wet jeans”
I am thankful for each of the powerful and thoughtful women who came before me, and I work to celebrate and support those who stand by me now.
Together we can create a better world for all those great women to come. https://t.co/R7vk1AAr39
Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans https://t.co/2fEVPkcO93 https://t.co/NpVNuuIx5k
@shu251 Beautiful (sad) image!
Even microscopic organisms are impacted by plastics! https://t.co/SHT2zh1wzs
@mikerappe An amazing Christmas gift from @oceanslebrasi
@pHsquid Oh my. Woops! 🦑
Conference on a Friday means fun socks! #osm18 #krakensexist https://t.co/ZrkktXeHLA
@hollybik @ctitusbrown Thank you! 😊
@mollyelissa hey! I saw you! Can we meet up to say hi? Poster session?
@JAshworthUTS Yes. I think @ctitusbrown would appreciate that comparison
#Postdocs: How do you refer to your PI (the person in whose lab you work) in conversation with others?
@Raphidophyte 😊🐧❤️
Calling all #LGBTQ oceanographers! Let’s meet up at #OSM18!
🌈🌊🌈
Wednesday, February 14th, 7:00pm-9:00pm, RSVP @ https://t.co/MpzrM6Zu7l to get location details. Spread the word to your non-tweeting friends. https://t.co/BCX5AkafXf
Back from Antarctica and headed to #OSM18!
Thank you to all the participants and instructors in the @NSF_OPP Advanced Antarctica Biology Training Program! It was an incomparable experience made better by the awesome crew.
❄️🛫🛬🇳🇿🛫🛬🌴🛫🛬🌊 https://t.co/CYDwZgYdEy
A several day delay getting off the ice meant I got to teach the first ever @swcarpentry workshop in Antarctica!
I didn’t manage to get a picture while I taught… But here are some guys who were on the waiting list.
Everytime we go out into the field from McMurdo we have to bring a lot of stuff– equipment as well as tons of extra clothing in case the weather changes.
It makes for a cozy ride in the back of the pisten bully. https://t.co/pCYeQSzBiA
Duct tape engineering making the DNA extraction happen. https://t.co/zh3mplnBMj
The cargo ship that does the annual supply of food and other items has arrived with the help of the US Coastguard ice breaker Polar Star! I hear rumors of some freshies bring on board… 🍊🍎🍇🥑🍑🍓🍌 https://t.co/TsbaEhqSzQ
I have done more net tows than I can count. Doing a net tow while kneeling on the edge of the sea ice wearing a climbing harness was definitely a new experience. https://t.co/ffIck8SMzw
The Antarctic Treaty (drafted December 1, 1959 by 12 countries involved in the International Geophysical Year) was very forward thinking. It specifies in Article III that scientific observations and results made in Antarctica must be ‘made freely available.’ #openscience https://t.co/fC3fV9Z4oo
@camille_codon @ctitusbrown Will do 👩🔧🚎💥
@ctitusbrown @camille_codon Yes, one lifted truck and a penguin.
Y’all. It is #PenguinAwarenessDay. And it just so happens that I was hanging out with some cool adélie penguins yesterday. https://t.co/kIb3QVsCPb
@luizirber @choldgraf @camille_codon That is exactly what I did! With estimated likelihood of attendance.
We took a helicopter to the ice edge to day to grab some samples from open water. These were not our samples.
🚁🐧❄️🐋 https://t.co/v5fHz0UWVO
We are using a hot plate in a walk-in freezer in a heated building in Antarctica. #efficiency 🤷♀️
@rec3141 Things I am leanring: Polar research is cold even in the lab!?
Current status: sitting in the walk-in freezer at night watching water filter in my extreme cold weather gear. https://t.co/YrDvnT41rP
I just found out that scientists at McMurdo are referred to as ‘beakers’.
I like it. 🔬🙌😝
@jvanderhoop @eapsMIT Will do :) I kind of wondered if you knew each other (given biomechanics and marine animals and BC)
@studentofwater @WHOI It was originally cut as a diving hole. It became our near-shore training hole– it is very close to the lab. But, yes, careful treading.
The participants and instructors in this course cover a huge range of interests. As a plankton enthusiast, it is a great opportunity to interact with the nekton-focused people.
Here Bob Shadwick assists Emily Matys (@eapsMIT) catch a rockcod.
📸 by T. Boothby https://t.co/dxTcmdUFER
CTD casts are a much different affair on the ice than on ships. Here, students manually lower the CTD down into the ice hole supervised by Instructor Sam Laney from @whoi (not that you can tell given how bundled everyone is). https://t.co/LFbtbZ6JNp
@Raphidophyte I have heard of small CTD type devices being adhered to seals and other creatures in other locations. But, here, nope. ;)
A note: as soon as these guys show up we must leave. Regulations dictate that wildlife cannot be harassed or interacted with in any way that alters their behavior.
Thus, if seals take up residence in our science hole– it becomes theirs until they decide to leave it.
We are drilling holes in the sea ice to access the biology that lies beneath. Unfortunate for doing our science (but fortunate for other reasons) the bigger biology (Weddell seals) really appreciate our efforts.
This guy popped up to get some deep breaths before diving down. https://t.co/lDvjaWFuPV
Scientists aren’t the only curious ones around here. A waddle of Adélie penguins came to check out who was making all the noise while we were drilling holes.
I am in awe of how quickly they can scoot along the snow on their bellies. https://t.co/Wdiy3Sq7yx
We finally got out on the ice yesterday for the final part of our training (sea ice safety). We learned when it is safe to drive vehicles over cracks in the ice. Though the ice here is incredibly thick (~1.5 m) cracks can still be a hazard. Check the drill used to test thickness. https://t.co/kN4rTVeOpn
@ctitusbrown Looks like where I am!
@hollybik @jklonthair No convos! Way too loud on the type of plane we were on. I did a lot of reading… and sleeping.
@hollybik @jklonthair An 8-hour flight into the great white wilderness will do that to you! Looking forward to catching up!
@MRM_OCEAN Yes! It is hovering around -1C here! Wish I could post one back to you.
We arrived on the ice! Since then, it has been a whirlwind of safety training and orientations. Yesterday, we had an all-day symposium with talks from each of the participants– the diversity of science is phenomenal (exobiology to birds to ocean life). Pic from @jklonthair https://t.co/cWzeF3Aqx2
And after some weather delays we are off! We are taking an 8 hr flight on a C-130 down to McMurdo. During the flight you are required to wear all issued Extreme Cold Weather gear. Good thing we have name tags. https://t.co/Y8Lzo6M26t
@ctitusbrown Yes, they go clockwise and we go counterclockwise. I think it has to do with the Coriolis effect (only backwards). #trustme #iamanoceanographer
Arrived in Christchurch. Found a public, outdoor 50m pool. Discovered that even the swimmers swim on the opposite side of the road. 🤷♀️🏊♀️
@subsurface_life Suns out, guns out.
@MEPjoe That makes me even more excited 🌖
Starting off 2018 with an adventure! I am packed and headed to Antarctica (by way of NZ) for the Training Program for Early Career Scientists (https://t.co/nIYU10zHiv). https://t.co/9Ry8VtYTK8
AMBER: Assessment of Metagenome BinnERs https://t.co/IUh0ZLMk0K
@markiebeth @jonfavs @jonlovett @TVietor08 @JoshMalina @HrishiHirway @shu251 Looking good!
@jvanderhoop Yogurt + Tumeric + Oatmeal + GBBO = #w1lsonhygge💚
@ca_durkin Wow! Beautiful! Great work.
(I spent an embarrassing amount of time wondering what species ‘linocut’ is.)
Nice! Curious to try it out. https://t.co/tKSsACgIwW
“We need to remove the power of the ‘open secret’ that these people use to take advantage of their respected positions in our field. We know who these people are, and we should stop tolerating this culture of harassment…” @KLdivergence https://t.co/pROU9i9SwT
@PlanktonPundit @zeiss_micro Thank you! I will look into it. I think it might be the same that @ca_durkin has?
@PlanktonPundit @zeiss_micro Wow, gorgeous magnification for a video! I am impressed (and soon to be on the market for a microscope). Would be interested to know the specs!
@rec3141 We are working on something sort of like that. Early days.
Protists are awesome. https://t.co/3ukftWIHGq
@rec3141 And hope that there aren’t too many dinoflagellates in the samples.
@rec3141 Better get cracking!
@rec3141 That was very sweet of her.
@rec3141 Boning up on your French 🙃
@allysauris @FulweilerLab @subsurface_life @jess_carilli Maybe just combine with some readings from Kirchman? L and P is a great text– but I also don’t know of any updates.
@JAshworthUTS I shall send you to argue in my stead.
Current status: eating popcorn, pulling data from old papers for a meta-analysis on mesocosms, and resisting the urge to insert myself into Facebook debate on ‘gay marriage.’
… marriage is defined as between a man and woman not because of the Bible but biology 🙄
Tricorders have officially arrived 🖖 https://t.co/ytnxWD6Ey8
Also check out a wonderful perspective piece on the study by @RynearsonLab : https://t.co/Cmtkaksd7p https://t.co/q0YWgmPubY
Awesome merger of biogeochemical modeling and meta-omic data: Ocean biogeochemistry modeled with emergent trait-based genomics https://t.co/zfkoAJuIuZ https://t.co/GSHXoJymzZ
@lydee Thank you @lydee !
@rec3141 @hollybik Right!?
Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom https://t.co/3tRb01IqFz Awesome experimental design! https://t.co/C2rqtWU0rT
@rec3141 The nice thing about environments is that if it needs to be python 2.7 you can change to : conda create –name groopm python=2.7 and then you will opperate in 2.7 space.
@rec3141 Also, not to totally derail your efforts– but maybe checkout metabat (https://t.co/8FpKeUvI5K). It works well and tested pretty well in CAMI.
@rec3141 This is one time when it is nice to not have 140 characters. :[
@rec3141 Don’t reinstall pip.
@rec3141 Do you have Anaconda installed? I would suggest creating a virtual environment with either virtualenv or conda (e.g. conda create –name groopm python=3.5). Then source activate groopm. This will put you into a special environment where you can install all the things you need.
@ChalkyOceans @oceanslebrasi @D_GwynEvans @asanfra @abogdanoff Based on the texts I am getting I am glad you guys are keeping an eye on her!
@rec3141 My labmate @camille_codon sitting next to me: “…. you can’t reason with perl programmers. They are already lost.”
@rec3141 Open your heart!
And of course, a link that should work more broadly: https://t.co/4PTjoiukcm Thank you @hollybik! https://t.co/MGxdjJS7V3
@hollybik @jessicayluo Ugh. Wiley. I was having this problem earlier. I shall fix.
A fun perspective piece that came out of #EcoDASxii: Integrating “Big Data” into Aquatic Ecology https://t.co/rJB1OyBlum with @jessicayluo and others not on twitter. https://t.co/N8uSBgtJlJ
@hollybik @pitchinteractiv Guilty as charged.
@subsurface_life @ctitusbrown @ucdavisvetmed It is terrifying advice but oddly liberating, and I try to remember it in my daily life.
But as someone who is pre-tenure, I feel that I must at least entertain other’s definition of success.
@subsurface_life @ctitusbrown @ucdavisvetmed She hopes so at least…
@MarioMuscarella Useful, but at somepoint… Google. Take a break.
@ctitusbrown @monsterbashseq @luizirber @saltyscientist @tracykteal I love how you got a photo with @monsterbashseq looking at the camera :)
@ctitusbrown @schwessinger @pathogenomenick DAM is great! Headed there now in fact.
@jvanderhoop … that is big.
@megkmay @SymbiosisRox That was my experience as well! Go for it!
OH during evening work times: “Sometimes I think I’m a really good coder… and then I realize. I’m not.” @oceanslebrasi
Yup. Been there.
@WillingCarol @hollybik @ctitusbrown That is clearly a happy Github Octocat!
Guide for setting up JupyterHub for workshop/courses: https://t.co/OZ70fF3JbP #binder
@JPMcCrow @monsterbashseq Looks like a full house!
Disturbing allegations of sexual harassment in Antarctica leveled at noted scientist https://t.co/QvDFI8887V
🍕–> 💸 –> 🇵🇷
Today in Davis! https://t.co/psiyyzhLi0
UC Davis for Puerto Rico https://t.co/Ef1kzxvCqw
@JulesDeep Nobel winners are more likely to have facial hair than be women. It is from a few years ago but is still relevant: https://t.co/amUAX7bIAV https://t.co/dXzMPCBCQP
@jamesrco @swcarpentry @uwescience That is a long workshop! Have fun!
@jamesrco @swcarpentry @uwescience Are you an instructor?
@ctitusbrown @SlackHQ Glad you removed affiliations there. Gotta keep up my street cred.
@todoscicese @brooksph @ctitusbrown @PBattaLona … and the view wasn’t bad either ;)
Wrapping up an awesome week at @todoscicese teaching Metagenomics with @brooksph @ctitusbrown. Thank you for the hospitality and questions! https://t.co/UilBznjUgU
@wildthang1276 @merenbey @doe_jgi And @jessicamizzi!
@wildthang1276 @merenbey @doe_jgi Looks like a great group! @wildthang1276 @shu251 @v_kivenson
@kylefrischkorn Why! HOW?!
@ctskennerton @StevenJRobbins Same here for research. When we teach Q-trimming we recommend trimming at a very low score (~2). Not Meta-G but see: https://t.co/laYPF6tjYP
@hollybik @LaneLabURI @DeepMicrobe @JulesDeep @subsurface_life @SMincksHardy @kmkocot @hyphaltip @RebeccaRHelm @beroe @caseywdunn I shall as well! Thanks, Holly!
Host-derived viral transporter protein for N uptake in infected phytoplankton https://t.co/sw6iLXMDbe Great paper by @marinebugs et al!
@kylefrischkorn Jo–leeeEEeeeEEEeeeEEee–N
@kylefrischkorn @blkahn @Pierre_Markuse @goodnesglaciers might know or know some other sources?
@smith8272 Nicely BuzzFeed-ified
A Wakeup Call on Writing Instruction (Now, What’s an Adverb?) https://t.co/8elOylKChR
@goodnesglaciers New link: https://t.co/eOoBqiQkVn
Watch @goodnesglaciers thesis defense! Streaming live now: https://t.co/eOoBqiQkVn
Note: this is a new link
@cmdarwent Yeah… and a bit disarming.
@cmdarwent I will keep an eye out but I have a feeling it was a pro squad. 4 bikes + power tools taken from the garage.
@tracykteal Great idea– I will look into it. It is not a terribly valuable bike but I love it. Izi’s beater was the only one to survive…
@ctitusbrown Hah, no I can drive. I get to pick my great Arctic explorer @oceanslebrasi up at the airport afterward!
@ctitusbrown And also hassle anyone on a tan bike. But how do I get there without my Bertha??
@ctitusbrown Meeting @brooksph there this afternoon to work on metaG course materials ;)
@ctitusbrown Yeah– given that they took 4 bikes in total and all the power tools
@njgoldbaum Hah, I am deep in the Fourth step: grieving. I guess I am now in the market to buy a new old bike!
@njgoldbaum Thank you!
In case anyone sees comes across it– it is a tan 1979 Motobecane Grand Touring. And I loved it.
@njgoldbaum So obsessively searching Craigslist is pointless?
Yes, a police report has been made– but it sounds as though it is unlikely to be recovered…
If your bike was stolen out of your garage in Davis, CA, where would the thieves likely try to sell it? Craigslist? Bike shop? Another city?
@jamesrco Yeah– the port issue leads to dongle hell.
@jamesrco Agree! I have just the new MB. It is good for travel but not for in office external display usage.
@GeoMicro_DRL @ctitusbrown @brooksph Too cute!
.@brooksph giving the farewell address on the last day of #dibsi!! https://t.co/UbA2YLYajD
Running through #anvio workflow with @v_kivenson at #DIBSI Env MetaG workshop! Great tool for pulling it all together! @merenbey https://t.co/MmQUDnpuhd
@subsurface_life @hanson_lab @AdamGrayMarsh Congratulations!!!
.@jmblanton leading a great discussion about how to assess the quality of your metagene assembly at #dibsi Env MetaG workshop https://t.co/eQPr9nB3mT
Awesome effort and a great resource! https://t.co/dhGIai5SKF
Beatles cover band at the Molecular Life of Diatoms banquet. Great end to awesome meeting! https://t.co/mupeDdh3ef
@daanspeth Unsurprising… but say hi to him anyway (even if he won’t join the tweeps)
@daanspeth Lewis really needs to get a twitter account ;)
@kylefrischkorn Didn’t you make the switch to pandas?
Nice writeup on t-SNE vs PCA for RNASeq https://t.co/iNucFtfOod
Virus-host relationships of single-celled eukaryotes resolved from metatranscriptomics https://t.co/kUfeOmeIgw Awesome work by @mmzbd! https://t.co/KEQpxmr6xd
@JulesDeep @WHOI Snack drawer for sure
@StevenJRobbins @ctskennerton Ah, I see. Well… that is perplexing!
@StevenJRobbins @ctskennerton Yeah– we were also trying to do this to ID auxotrophy. From KEGG website (below). Basically ‘-’ = optional, ‘+’ = required in complex. https://t.co/5e02tCtK11
Racing time to Explore Ocean Ecosystems: A Mother’s Work https://t.co/fnKd9bypeM https://t.co/tDcJaLYcwc
@Paul_Carini @drdrewsteen Ah, my bright side: only 105 in Davis ;)
@drdrewsteen And here I thought it was just me…
Congrats SeaBass! Future bioinformatician in the making! @stanford #stanford17 🍾🎊🎉💙
@wildthang1276 @SymbiosisRox Also you can parse the htext off the kegg site to get brite hierarchy etc
@wildthang1276 @SymbiosisRox Written for model organism but I have done it with kos: https://t.co/wrTda9F0Uh
@ctitusbrown Yes. Just trying to remind myself that the East Coast has some benefits.
Summer in Davis What’s that? High of 109? Oh, thought I’d misheard.
#postdochaikus #missingtheocean
@JAshworthUTS @SAGRudd I suppose the major limiting factor is knowing what you are looking for/having a reference
@kylefrischkorn @AAASMassMedia Only one reason it is worth a read…
It’s @kylefrischkorn first piece as a @AAASMassMedia fellow and the section breaks are emojis (💩s and 🍔s) https://t.co/i2bcYyYhYU
@ctitusbrown I converted @oceanslebrasi as well. I think that @camille_codon will approve.
@SymbiosisRox @StevenJRobbins @ctskennerton I am casually stalking this convo… what about nucmer in lieu of Mauve?
@AlistairDove Ditto!
Marine #Protists Are Not Just Big #Bacteria https://t.co/Y3XQdIHrUN 🙌 @fonamental https://t.co/9B9tni9To8
@camille_codon Did you saw it in half?
Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton https://t.co/goVhLoie60 https://t.co/0rgoBV218o
@Hao_and_Y @ctitusbrown Thanks for the suggestion! Looking for some good science summer reading
@jvcdelaney @ca_durkin You might enjoy…
I think we need this @jvanderhoop https://t.co/E29u4QTvNz
@ctitusbrown Is this in your personal lending library? Would love to read it (though not this month)
Wishing I was @MIT to celebrate with all my newly hooded @WHOI #mit2017 friends! Congrats guys! https://t.co/oirgHDYr9K
@kylefrischkorn Sounds like a win to me.
Race day success! Flight and BBQ to celebrate Izi’s first swim race… https://t.co/dLYHiRzHjr
Climate change knows no national borders. Global resolve is our only hope to address such a far-reaching danger. #ParisAgreement
Transcriptomic and microRNAomic profiling reveals multi-faceted mechanisms to cope with phosphate stress https://t.co/v3F8tXswrY
@merenbey @ctitusbrown @tomodelmont I shall drop you an email soon!
@merenbey @ctitusbrown @tomodelmont I would love that! We are building a bit off of previous workshops we have done. I really love the viz. of redundancy / completeness.
@merenbey @ctitusbrown @tomodelmont We are thinking of using the anvio workflow this for the DIBSI Metagenome workshop this summer!
Epibionts dominant metabolic potential of Trichodesmium in open ocean colonies https://t.co/m9UozjDI3S @kylefrischkorn @DyhrmanLab https://t.co/8JQjANGYxF
cc @jessicamizzi @ctitusbrown https://t.co/pXs5e90ePT
@StevenJRobbins Coincidentally I was told the same thing by the head of the bioinformatics center we used (similarly, over 50)
Breaking the Oxygen Barrier in Microbial Cultivation https://t.co/H20L5IqUTS
@JulesDeep The building in the cartoon looks like it could be Lillie
Metabolic evolution and the self-organization of ecosystems https://t.co/Q9iCery0f2
@wildthang1276 Pretty crazy… control of euks by vibreo.
An Aphrodisiac Produced By Vibrio fischeri Stimulates Mating In The Closest Living Relatives Of Animals https://t.co/MeAB9e0Gb1
@ctitusbrown 😇😇😇
First run of #couchto5k post #achillesrupture! #lezgo… https://t.co/jzhhkqV1qE
Following @camille_codon’s lead with a #DataDrivenWedding #diblabweddingseason https://t.co/zltsvKaBS5
Why I Decided to Stand Up for Climate Science https://t.co/jZLP1o9xOn By one of the many powerful women in my life, Sheean Haley @DyhrmanLab
En route to @ucsantabarbara to give the IGPMS seminar: https://t.co/E0a0HAoy5x
Excited to be near the ocean and meet the department!
Housing deadline for the #dibsi summer workshops (including Environmental Metagenomics) is tomorrow, May 9 https://t.co/nZyZOzCZgI
@sinkingdiatom @JChrisPires Saw his talk at JGI– it was very interesting and entertaining! Enjoy!
@hollybik @rec3141 @subsurface_life Sounds like an awesome session!
@Hao_and_Y @allysauris @FulweilerLab Twitter gets pretty weird late at night…
Note to self: get diatom-shaped candy.
@allysauris @Hao_and_Y @FulweilerLab Seriously? Way to good. Granted there is the danger of thinking your ASW is crazy contaminated ;)
@Hao_and_Y @allysauris @FulweilerLab I bet that will go over well… 😜
@allysauris @FulweilerLab … dare I say inspirational? Just need a small human now.
@allysauris @FulweilerLab I have always wondered if parents with the lab resources do this. So awesome.
@FulweilerLab @allysauris That is awesome!
@camille_codon @ctitusbrown Oh, the dashboard thing is nice! I like pyxley’s integration with pandas… sounds cool.
@camille_codon @ctitusbrown R, eh? Herm…
@ctitusbrown @macmanes @camille_codon Now you are poking the bear.
@macmanes @camille_codon @ctitusbrown Not to throw gas on the fire, but wouldn’t it depend pretty seriously on the euk?
@ctitusbrown @camille_codon Beyond the actual content of the poster… inquiring minds want to know how it was made. (Private repo tells no secrets)
As I am currently working on compiling a meta-analysis this fantastic advice!
HT @jvanderhoop https://t.co/hnVKWi4lh3
@ctitusbrown Great time to be starting out :/
@claczny @ctitusbrown Otherwise we would have been working to do custom Java installs and patches across the classroom.
@claczny @ctitusbrown We decided to keep it simple and user it on the Linux box we were working off of to stream line instruction for all participants
@claczny @ctitusbrown Re difficulty on Windows: the lapack install was complex and more involved than I wanted to do for people to use on their personal machines.
@claczny @ctitusbrown Couldn’t find an example on the site– though totally possible I missed it.
@claczny @ctitusbrown One issue is that I had a hard time figuring out how to assign color to different groups. I eventually figured it out through the paper.
@claczny @ctitusbrown So sorry! Clearly need to update my email info. We used viz bin in the class and people loved seeing what was going on :)
See @ctitusbrown, not lurking ;)
Fun things happened at the #metagenomics workshop this weekend at UCSC– hacked together a metaG binner with sourmash. Check it. https://t.co/m05KIQRmV7
@camille_codon You will have to post the final measure when you get it. I am curious to see how it compares to your simulated data 😍😍
@SciMarchSeattle @kathleenpitz – it is your idea!
Awesome Viz! @TaraExpeditions https://t.co/mMP31cld5W
@sondy 🕴️ 🌊 🙌
Trillions of Plastic Bits, Swept Up by Current, Are Littering Arctic Waters https://t.co/SPubzHso5O https://t.co/aAgQ6fCEEj https://t.co/t4oLW0r4PJ
Wanting to get into metagenomics? I will be teaching a course @ucdavisvetmed this summer. Bring your data! Should be a good time! https://t.co/OhnXMGmxrP
@kylefrischkorn @SmithsonianMag Always!
Congratulations @kylefrischkorn!!! So excited to read your articles this summer in @SmithsonianMag! https://t.co/2jDNYXISr9
@SymbiosisRox @jongsanders @KarthikGeomicro @StevenJRobbins I think that @kylefrischkorn has!
Go @goodnesglaciers!!! Happy #marathonmonday @wellesley… https://t.co/Sd2WxK2Y3c
@ctitusbrown 🙌🏊♀️🙌
Awesome extraction of hmw DNA by @monsterbashseq! https://t.co/gpFmaHbuGm
Phytoplankton can actively diversify their migration strategy in response to turbulent cues https://t.co/bdJ9EvNJfR https://t.co/teE8lNOQzL
@jongsanders @ctitusbrown @brooksph Ah, perl dependencies. I have lost days of my life to fighting with them.
@wildthang1276 @ctitusbrown @brooksph Too bad! Next year indeed. This is actually in prep for a course at UCSC ;)
@jongsanders @ctitusbrown @brooksph Nice! @monsterbashseq has been doing similar things with RNAseq assembly! She might be interested in your project.
@jongsanders @ctitusbrown @brooksph What kind of problems out of curiosity?
@StevenJRobbins @ctitusbrown @brooksph Always key!
@StevenJRobbins @ctitusbrown @brooksph Indeed! Best is not the correct word.
@StevenJRobbins @ctitusbrown @brooksph I guess it is all in the parameters that you choose and your reference data ;)
@StevenJRobbins @ctitusbrown @brooksph It is interesting because looking at some of the comparisons from BinSanity paper it would look like MetaBat is more contaminated. https://t.co/XTIWLDq51Z
@ctskennerton @ctitusbrown @brooksph I will add them to our list. Including a more visual approach might be a nice way to pull in diversity of learners! Thank you @ctskennerton!
.@ctitusbrown @brooksph Thoughts @StevenJRobbins?
.@ctitusbrown @brooksph We were thinking of using MaxBin or maybe BinSanity.
#Metagenomics tweeps: do you have a favorite binning software? @ctitusbrown, @brooksph, and I are teaching a course and want to add it
@ctitusbrown @kcwrighton @subsurface_life Gotta love slow swimming creatures :)
How to incite a twitter flamewar amongst the computer nerds according to @ctitusbrown:
#LearningSoMuchInMyPDoc https://t.co/q0dXHyTING
@psychemedia @ctitusbrown I second differentially coloring things based on syntax/type etc. It has helped me a lot.
#SJR34 is through the senate. This project will buy internet histories of legislators & make them public https://t.co/truBUyYjQJ #fairisfair
I love crosswords. I love regex. New procrastination that I can potentially write off as ‘training’: https://t.co/ummkg4KP81
Upshot of @ctitusbrown #JGI2017 keynote: What do we (biologists) need? Computational training.
Dammit, the transcriptome annotator designed by @camille_codon, always gets a laugh in the right crowd (those who know the pain) #JGI2017
@StevenJRobbins here here!
Career aspirators for a bioinformaticians: create good software and be left alone @ctitusbrown #JGI2017
Goals for @ctitusbrown #JGI2017 keynote: 1) entertain, 2) be controversial, 3) no equations (yay!), 4) come in under time (double yay!)
Question: what would you do with more sequencing capability? Deeper sequencing? More samples? …? https://t.co/93CH8K4PrI
@nekton4plankton good news is that it is largely asymptomatic. But then again maybe not….
Fun fact: ~15% of people reading this might be infected with Blastocystis (a cool protist parasite) #JGI2017
Interesting to see the terrestrial analog to the oceanic nitrogen limitation map I am used to https://t.co/jgkQA05zMH
Mock: ~28% of gene pairs are diversified alleles in F. cylindrus. More here: https://t.co/4WDsNPvmhM #JGI2017
Mock: no enrichment of Fe-binding proteins but enrichment of Cu-binding; enhance competition in low Fe environments #JGI2017
Thomas Mock on sequencing the genome of extreme cold adapted diatom Fragilariosis cylindrus #JGI2017
New goal in science https://t.co/wRkOEj94py
Smorgasbord of data from Lake Mendota ranging from 16S -> metagenomes -> single cell genomes #JGI2017 @quendi
@subsurface_life chicken love 😍
Gearing up for meta-analysis of warmed mesocosms with some #ecodasxii peeps. Protocol is out; now onto the data! https://t.co/uHo6ovCP6g
I want a set! https://t.co/YGJ7AoLrqo
@kylefrischkorn @DyhrmanLab Love it!
3D structures of individual mammalian genomes studied by single-cell Hi-C https://t.co/9BxFDG9LpE https://t.co/QumwwJzFGy
@cvd6262 @byuhobbes Live and learn everyday. That is all kinds of awesome!
@cvd6262 @byuhobbes Well… it might be a hard sell for Medieval Studies majors. ;)
@byuhobbes Moral of the story: Biology undergrads, take more math (especially proof-based courses)
@jvanderhoop Sigh… but it has been a year. Also– she basically filled my niche ;)
@jvanderhoop A woman after my own heart. Alas, I never got a call ;)
@nekton4plankton Journal club with @camille_codon just pulled it all together. Proof fun times in the #diblab.
I remember an undergrad professor of mine questioning why I was taking graph theory/real analysis as a biology major.
@byuhobbes @ctitusbrown @luizirber @betatim … and I was just beginning to figure out my major (French… or Astrophysics?)
Pictures are hard to deny: Greenpeace Pictures Show Climate Change’s Dramatic Impact on Arctic Glaciers https://t.co/CvHe99SfKD https://t.co/ZztLvplKHS
@monsterbashseq @SylviaEarle @AmyApprill @LexFischer @tracykteal @CoralTrace @RuthDGates @SESYNCDirector @EleanorFrajka @digitalFlaneuse
My abbreviated list (lab meeting time) is biased towards the #oceanography and #datascience crowd– so please add! I want to grow my list!
@karen_word @archaearama @chicaScientific @carlystrasser @katyhuff @goodnesglaciers @smith8272 @shu251 @sarahbdas @fstraneo @FulweilerLab
@wildthang1276 @JenkinsLabURI @RynearsonLab @LAHug_ @algoriphagus @RallidaeRule @Mammals_Suck @CHONPSoup @emmoxiely @ekbors @ElishaMariePhD
@hollybik @JulesDeep @jvanderhoop @KujLab @subsurface_life @monsterbashseq @camille_codon @AlelimonHA @DyhrmanLab @MicrobiomDigest
Happy #internationalwomensday! Taking a page from @phylogenomics I urge you to go follow more #womeninstem. Some awesome tweeters include…
Sailing through uncertainty– wonderful piece by @kylefrischkornon reconciling his loves of writing and science https://t.co/tRMTfGPV0G
Post conference beach time @ Waimanalo Bay Beach https://t.co/ogsvBDtFVP
The mentoring programs @ASLOMtgs are a fantastic experience for both mentors and mentees. Sign up at the next meeting! https://t.co/YpojJaMWMz
@AlelimonHA @ASLOMtgs so wonderful getting to know you! I have a new found appreciation of coral microbiomes!
Awesome talk @monsterbashseq on how and why you reassembled 600+ transcriptomes #mmetsp #ASLOMtg https://t.co/nnwJP9l7sh
@CClosek @wrong_whale ditto!
A New Long-Term Ecological Research Site Announced for the Northeast U.S. Shelf with @WHOI https://t.co/gkvVqzTs8R
Communication through comedy: @SESYNCDirector on @StephenAtHome show in 2010. Amazing. Check it out.
https://t.co/Mo7L9DbHXY #ASLOMtg
Lessons: engage early and often. And remember that environmental problems are social problems @SESYNCDirector #ASLOMtg
The “loading dock model” of #scicom: Look, I did lots of science! Here it is (papers talks etc).
Rarely translates well. #ASLOMtg
Persistence is key in #scicom – policy lags science by many years. You need to be consistent in your message @SESYNCDirector #ASLOMtg
There are more outlets than ever before for scientists to engage and communicate with the public @SESYNCDirector #ASLOMtg
@ctitusbrown working hard… Whew.
@nekton4plankton @kylefrischkorn @CHONPSoup
Interested in continuing the conversation from the Microbial Adaptive Physiology session? Come join us at Mai Tai bar at 7!
ASL-STEM forum: a great web platform for broadening ASL’s technical vocabulary https://t.co/rzDRjjhKio
Include at least two deaf students in your program to facilitate support networks. Might be easily broadened to inclusion of other groups.
Solomon: How can we encourage more #deaf and hard of hearing students to maintain interest in #oceanography? #ASLOMtg
Super cool @wildthang1276 https://t.co/bxfVXtn0WR
Running a session makes it hard to tweet… #aslo2017
@ctitusbrown I was on the HPC ~15 minutes ago. I have since been booted and can’t get on.
@nekton4plankton with @ctitusbrown @camille_codon
Glades and powder with the #diblab crew @ Mt Rose Ski Tahoe https://t.co/4cX0o08ijb
Working at my home desk and it must be a bit past 10 as the opera-singing jogger just went by my window. No need for a clock in Davis.
@sondy mysterious…
@HeathervdH @jvanderhoop @katybarnhart @wpalen @oceanslebrasi @AstroKatie @realscientists Count me in!
A throwback with @kathleenpitz with some oceanography-themed #Valentines https://t.co/ujYDRdYYaA
@FOAylward @drdrewsteen @virginia_tech Congratulations!
@GreeneScientist @carlystrasser @ctitusbrown @monsterbashseq until next time, @camille_codon https://t.co/1DKH1wSwbJ
@GreeneScientist @carlystrasser @ctitusbrown @monsterbashseq me too… @camille_codon won over hearts and minds.
@ca_durkin very! Did you take that photo?
Tracking the impact of the #MuslimBan within the scientific community https://t.co/EkY1MnetdP
Librarians are the best! https://t.co/O3pvzUvdmZ
Backing up some solar irradiance data with #datarescuedavis https://t.co/VesdGosYmU
One more thing to keep an eye on. Proposed bill to limit US contribution to #IPCC etc. https://t.co/zuV9t9lkA9
Light amidst all this political madness. Sci podcast hosted by an inquisitive six-year-old @natepodcasts https://t.co/XQjgEUV4uI
Letter from CEO of @theAGU to McCabe of @EPA re: #EPAgag: Openness of sci. info vital to informed decision-making https://t.co/taWp7kFqgF https://t.co/Mnvphv7R7k
@njgoldbaum Oh no! Stuck in HI?
@kylefrischkorn the happiest thing on my feed today.
“We are always confident but never correct” – Kirshner on astronomers. Easily generalized to encompass all scientists #MooreData
Today at #MooreData early career we are combining with the #moore Marine Mirco. Initiative group
@jamesrco @oceanslebrasi always appreciated!
@jamesrco @oceanslebrasi @MEPjoe yes! Very neat. They highlight some of these types of studies in the article.
@jamesrco very true– but as being a more generalized mechanism behind evolution it is interesting
@DrDanielReed particularly pertinent as my physicist girlfriend sent it to me :)
Fascinating idea: Darwinian evolution as specialized case of dissipation-driven organization https://t.co/jyzKi7z8vi thanks @oceanslebrasi
“Star Trek points to a future in which human civilization [can] provide everyone with the basic necessities of life” https://t.co/AAjzoSUzFx
@sochunese @CHONPSoup @emmoxiely @ekbors @jamesrco season = 2 weeks…
’tis the season when too many of my friends became doctors. Congrats @sochunese @CHONPSoup @emmoxiely @ekbors @jamesrco #SRosengard #NHawco!
@shu251 In single cells vs culture: Transcript recovery rate, lower; randomness in gene expression level, higher
Single-cell transcriptomics of small microbial eukaryotes https://t.co/ui3ASOBalj https://t.co/Q9ef9TKlGs
@ca_durkin awesome! Good luck!
@ca_durkin @SchmidtOcean @MLMLmarinesci Nice choice! Planning to isolate or visualize on the cruise?
@katyhuff It is going to be an interesting 4 years…
This is ringing quite true to me today… maybe I should finally start a blog. https://t.co/NCc1ScG59A
@kylefrischkorn So wise… I imagine President Obama will soon have more time on his hands to provide comments. :(
@kylefrischkorn lol. After having two papers rejected this AM… I am feeling pretty negative about the peer review process.
President Obama on clean energy: https://t.co/8ONSr3KzgB
Makes me sad to read the Email Contact information. https://t.co/4TL9Ox07al
@kylefrischkorn I heard on npr that the paper wasn’t peer reviewed… I suppose when you are POTUS you get to have some passes.
SeaView: Unifying Ocean Data into One Searchable Set https://t.co/vj8xuBEjpT HT @ctitusbrown
@macmanes Same boat… but following to see what others might think.
Genomes of dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle https://t.co/PabVxnfRUe https://t.co/bmlMvNZH24
iVirus: facilitating new insights in viral ecology with software and community data sets https://t.co/xVx3MOrOOF
New study sets oxygen-breathing limit for ocean’s hardiest organisms https://t.co/WobmkwMMOD
@ctitusbrown @GreeneScientist @nomad421 That is too bad! Touch-bar sounds fun though!
@jvanderhoop @goodnesglaciers Brutal little creatures, they are…
Genome-wide selective sweet in wild populations https://t.co/39DmL1pkfL
@ctitusbrown Thanking the python gods for scipy.io.loadmat…
Digging through some very old code to regenerate a figure for a paper. A good reminder of where I started… Oh, hey, MATLAB.
@ctitusbrown Good, perhaps Lego Land was just too much fun :)
@ctitusbrown Poor tyke! Hope they feel better soon.
Molecular insights into a dinoflagellate bloom https://t.co/tWajqXxh48 https://t.co/Ef0pLRv0Zz
@kylefrischkorn Welcome to the Dyhrman-Grad-Brain-Collective. https://t.co/znsJ4yHVYY
@kylefrischkorn You, my dear sir, are a poet.
@kylefrischkorn Bonus points if you can manage to write like this in your thesis abstract.
@kylefrischkorn HIIIIII!!!!!!
@kylefrischkorn Oooh… good question. Off the top of my head this: https://t.co/aw6lAw9rbP
@kylefrischkorn Wow.
Cake Doctors at work @goodnesglaciers @carabonate @kacastagno https://t.co/rfsXuXvlk5
Biologists, @karen_word & @ctitusbrown want to better understand your computational training needs. See the blog! https://t.co/rcribL3w5w
@caleweissman pajamas
A word to the wise: Don’t refer to your female colleagues as “girls” before they have had their morning coffee… or at all for that matter.
@daniellegruen agreed. I don’t expect much from @BreitbartNews… but I am very disappointed in whoever tweets for @HouseScience
Scientists, now seems like as good a time as any to contact your representative. Especially if they are on the @HouseScience. https://t.co/YronaxC0dR
It’s would be wonderful if @HouseScience showed more prudence before tweeting politicized, unscientific “news” to their >150k followers. https://t.co/2ndlfCHAXu
A Russian Trump fan is celebrating by hacking Google Analytics https://t.co/1nZIJTqMGb
Yes, even my piddly site. https://t.co/YVAPowh9iI
@Drew_Lab That is such a good idea!
The same holds true for environmental science: The power of #bigdata must be harnessed for medical progress https://t.co/l3Wlmm5vBP
@fonamental I might wait until it comes out in print :) Thank you!
@nekton4plankton And of course the link doesn’t work… https://t.co/fi4MG8sjEB
New paper out today! Probing the evolution, ecology and physiology of marine protists using transcriptomics https://t.co/EggNrA7dPj
@drdrewsteen the thing I like about the “you are welcome here” message is that it is not lgbtq specific. Make one without a rainbow perhaps?
@drdrewsteen the WHOI one was designed and distributed by a student based off of MIT’s.
Marine methane paradox explained by bacterial degradation of dissolved organic matter https://t.co/Xl4zEtkIZk
Just bought my ticket back east for @oceanslebrasi thesis defense! See you in December #WoodsHole! #izi 🌊🔬👌
tldr; code can change post-publication. archiving work for scientific publication is a good idea. https://t.co/fagz43yWGU
@nekton4plankton Featuring one of my favorite Professors from @Wellesley, Aquatic Ecologist, Marianne Moore
Eutrophication & toxic blooms in Baikal:“Unfortunately, we’re now repeating the mistakes of so many other countries” https://t.co/TVNCkdA0rK https://t.co/nk4RsWuxBG
Always remember that it is important to define your study terms in a scientific paper.
https://t.co/TAnOq9VZFP https://t.co/2rPRthNnjU https://t.co/zdsLgjNTa0
@kylefrischkorn PS: We should chat if you want to go in on AirBnB with me and Winn (and maybe others)
@kylefrischkorn word. we will commiserate in HI.
@kylefrischkorn filibustering… nm. funny joke inside of my head.
@kylefrischkorn will start off reading from the Goldfinch… and move through the rest of Donna Tartt from there.
@kylefrischkorn @aaas Not what someone starting a lab wants to hear…
@pgirguis Will do! Looking forward to it!
@pgirguis that would be great! Alternatively, I am going to be in Mass. for the month of December and would be happy to stop by your office
Great time at #NAKFI2016 this week– excited for what is to come! https://t.co/4FvggzbNOq
@subsurface_life @ctitusbrown meeting IRL is the best
We were paired with awesome illustration undergraduate students who interpreted and participated in our scientific wanderings #NAKFI2016 https://t.co/fLw2Xjotu6
“Women are first-class at Wellesley… When you graduate, it’s hard to go back to being second-class.” https://t.co/fpTowo052z #siblinghood https://t.co/GsHnyCJaLt
@subsurface_life @pgirguis I am not going to be at AGU… maybe I can skype in for a beer ;)
We (artists and scientists) are searching for something to remind us that we are alive – Doug Aitken #NAKFI2016
@JulesDeep and no POC…
@JulesDeep wondering the same thing about the mountain lion
It is not a new thing to bring together the mysteries of science and the beauties of art @Eaterofsun #NAKFI2016
“Put on your seatbelts, it is doing to be a great ride” –Dave Karl, steering committee chair introducing #NAKFI2016
@WildCora yep, and feeling forgetful/distracted as ever
Suffering from some serious post-election brain.
@_inundata sign me up
Broke out the @Wellesley gear– wish I could be on campus for this historic night #imwithher #voted #wellesleylove https://t.co/RFnPEixn29
That moment when you are looking for a quick primer on something and the top google hit is a blog post written by your lab mate @byuhobbes
My friends are pretty awesome! Congrats, Joern and @jillmmcd! https://t.co/V5Uoc87Yjz
G.R.E. Questions for the Real World https://t.co/eaqWjlYopR
Finally beginning to see the light at the end of the ‘major revisions’ tunnel. So excited to have my last #PhD chapter move off my desk.
A dissolved cobalt plume in the oxygen minimum zone of the eastern tropical South Pacific https://t.co/5OwELVguSQ
@kylefrischkorn I am judging you as well.
n=5 in the Brown lab… just need a few more joiners-on https://t.co/CjopkyqXxd
@KirkwoodLab @LM_Campbell @drtightline Great idea!
Some very familiar works being highlighted including bacterial quant. from H. Jannasch & Jones and chloro-pigment quant. from C. Lorenzen https://t.co/PXmEcp5SKQ
Celebrating 60 years of @aslo_org Journal: The Top 60 Papers from the First 60 Years of L&O https://t.co/2JBHtKom9h
@camille_codon @ctitusbrown What the… ?
@ctitusbrown The real pro move was hopping a flight to Europe immediately following installation.
@ctitusbrown It makes the cat clock down the hall seem less annoying :)
. @ctitusbrown installed new clock in the lab that plays a synthed-up version of “Amazing Grace” every hour
It is awesome to see the myriad of big data types in a relatively small field.
Working with an awesome group of early career scientists to pull together some manuscripts on #BigData in aquatic ecology. https://t.co/oHetaPfsKU
@hollybik @ctitusbrown Oh no! I am so sorry! I wish you were going– it would be great to meet in person. I promise to tweet like crazy!
Just got my #NAKFI2016 binder. Excited to meet and work with the Seed Idea Group on Biodiversity in the Mesopelagic!
#ecodasxii Twitter role call: I want to follow all of you! @MarioMuscarella @WildCora tag any you know?
@nekton4plankton #synechococcus
@nekton4plankton Diagnoses growth rate of a population in situ and shows temperature-induced changes blooms timing with warmer water. Wow!
Physiological and ecological drivers of early spring blooms of a coastal phytoplankter https://t.co/3MHrevuYD0
Check out new work from @MRM_OCEAN: Variable depth distribution of Trichodesmium clades in the North Pacific Ocean https://t.co/q5ESQdC4jN
@danielskatz @ctitusbrown @BiellaColeman very true…
“Science advances because of this sharing of ideas…”
Science is by its very nature, open. Check it out. https://t.co/38z3Sx94vE
@markjmandel @camille_codon @luizirber @brooksph @monsterbashseq @byuhobbes @ctitusbrown @BWFUND it was great meeting you!
NPR Battleground Map: Clinton Is Winning — And It’s Not Close https://t.co/XVIoRXb4JI @NPR But for all that is good, please still go vote.
@jamesrco Best significance statement ever: “Unfortunately, at present, chocolate products contain too much fat, leading to obesity.”
Very well put. https://t.co/kueYdPW83Z
It is mid-October and I am missing fall in New England right now. I now get leaf-peeping as a popular tourist activity.
@phylogenomics @saltyscientist @ctitusbrown Handle is @nekton4plankton, but it is neat to find a doppelganger in name, @HatAlexander
New idea for funding my future science: https://t.co/4XII99q4WP
Now I just need about 1M more followers… https://t.co/1N95OZbSKO
A report on the metagenome workshop we ran last week at Scripps https://t.co/FviKfcVQ4H
“Data needs to be searchable not only in theory, but in practice.” @ctitusbrown #titussio
Very solid pop culture references today #titussio
We treat data similarly to the arc of the covenant in Indiana Jones. Tuck it away somewhere in dark vault never to be used again #titussio
@monsterbashseq the data is available on figshare!
If you want more information on the reassembly check out @monsterbashseq blog post https://t.co/FTA4UFQRLg #titussio
Look at the @oxfordnanopore minion as an example– we are moving towards tricorder-like sequencing #titussio #startrek
.@ctitusbrown starting off his talk with his own hashtag #titussio
“Among the bioinformaticians that hang out on twitter…” @ctitusbrown
Defensive programming 101 with @ctitusbrown : Assert statements… use them. https://t.co/sDM3bgbxuI
The abstract deadline for #ASLO2017 is TOMORROW! … and while you are thinking about it, consider submitting to https://t.co/U9lsMS0R7t
.@hollybik @ctitusbrown Yep! Here it is: https://t.co/UjsG5IQzWr Curious to hear what tools others think would be good for metaG workshops
Setting up for day two of metagenomics workshop at @Scripps_Ocean with @ctitusbrown https://t.co/3xwBMGB4TK
@jvanderhoop Pro gbbo giffage!
The art of oratory is lost. #debate
“Research software is more than just code” – @byuhobbes
Diversity within the Trichodesmium holobiont https://t.co/xtO7ourzzp
Nice one from @MRM_OCEAN!
Giving a talk today @MLMLmarinesci at 1PM in the “think tank” on E. huxleyi
New assemblies of the #MMETSP are available now– check it out! https://t.co/DyuPciL8kl
@jvanderhoop Whattt?!
@ctitusbrown @SlackHQ @GreeneScientist clearly @camille_codon hacked giphy during code review…
@ctitusbrown @SlackHQ Fear not, @GreeneScientist, I have spread the knowledge to the rest of the dibbles.
Going to #ASLO2017? Submit to our session: Molecular Insights into Adaptive Microbiology https://t.co/H4t4Nu6lIJ https://t.co/9BUTwuL9fY
Supersized microbiology makes for some beautiful science: https://t.co/wBdopLtVsn and https://t.co/Xe2CKY1duP https://t.co/UMkwOX1Wvb
Amazing!! #WellesleyLove #StarTrek https://t.co/TeouZJjkK7
A merger of two of my favorites: #chess and #dataviz by @randal_olson: https://t.co/rscWysozdy
strategy >> capture https://t.co/LAJhgfasJA
De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning https://t.co/E58g1UdC0l
Study finds increased ocean acidification due to human activities https://t.co/GgMGnyURnq
Last shred of the summer on the wind and swell of tropical storm #hermine with #izi. 💕
@jamesrco @TesseraIO @PNNLab Awesome, I will look it up. Thanks!
Home again, home again, jiggity jig.
celebrating #blackcatappreciationday with my favorite member of the @dyhrmanlab #twitter https://t.co/loRpSw7OMK https://t.co/h5hr7WzXCY
Friday night lecture at the @MBLScience from Beth Shapiro. How to clone a mammoth: the science of de-extinction
@pathogenomenick Woah, awesome stats! Our # of avail. pores for the #micdiv2016 course was more on the order of 500-950. @monsterbashseq
Representation matters (especially to the littlest amongst us). Congrats on the record setting swim, @simone_manuel! https://t.co/f1JHID1gzN
#izi and #caroline at the 5th best attraction in Woods Hole: the draw bridge. (WHOI is 4th… https://t.co/dQFBWPqVZF https://t.co/vSyxKo8Ld6
Perhaps not instead, but yes.
cc @ctitusbrown https://t.co/O0tl4O2on3
Did my first @oxfordnanopore library prep under the guidance of @monsterbashseq. DNA today, genome tomorrow? https://t.co/G1fNjERUEW
Late night talk at #micdiv2016 from @monsterbashseq on @nanopore adventures
@nekton4plankton @jvanderhoop @goodnesglaciers @oceanslebrasi
Nothing says Thursday like #chicken #genetics https://t.co/iaPWcLWxqv
@ctitusbrown @brooksph @msu @MBLScience Good luck!!
Just figured out why my new computer only had ~50GB of space left. Mac Mobilebackups, why? https://t.co/GVyWLmdgPs
Longterm reproducibility in software is almost impossible with changes in platforms and libraries #ctbwhoi
Nobody is perfect– so iterate, iterate, iterate on your code #ctbwhoi
Invest periodically in training– training may not change but you will #ctbwhoi
Pro tip: don’t make your own version of existing, community supported, decades old tools #ctbwhoi @ctitusbrown
.@ctitusbrown talking about reproducibility in science at @WHOI
Feeling so much alma mater love today. https://t.co/fSSfx8jfr8
Five black alumnae recall @HillaryClinton while at @Wellesley https://t.co/yBLs3QhbDy (and some history on the founding of Ethos)
@ericmjl Perhaps it is as important to “learn how to learn anything quickly” and well. We are plagued by superficial expertise.
Hearing about PSAMM (Portable System for Analysis of Metabolic Models) at #micdiv2016 from Ying Zhang: https://t.co/B1wTU7lSbu
Yes they are! https://t.co/yyZDJhQZlp
Are men talking too much? For use in future meetings: https://t.co/LtiFVkCxxD Very nice, @cthydng
Absolutely unbelievable. https://t.co/mvm7oRqAQg
Hip hashtag for today’s defense #MofishMomoneyMoberg
Algal blooms: Study role of climate change in extreme threats to water quality https://t.co/WRE6t7vf1H
@camille_codon Well, you beat me to it :) Nicely put, Camille.
@camille_codon @scopatz @kyleniemeyer @jiffyclub @JackieKazil @carlystrasser I am down as well.
A nice afternoon diversion: Statistics for Hackers https://t.co/rFvZaIRqIS
For shame, internet. https://t.co/SyKOtd3my6
So exciting!! USA Rugby Names 2016 U.S. Olympic Women’s Rugby Team https://t.co/CpuHl62qsF
@ctitusbrown this is happening to you quite a bit recently. 😍 excel
@WillingCarol @jiffyclub alas, I fly out tomorrow. Around for the dinner or next time!
@WillingCarol @jiffyclub as a side note: your talk at the diversity lunch was a highlight
@jiffyclub And I have apparently been spoiled by my time in the life/environmental sciences.
@jiffyclub Certainly will come back. I was just surprised… I think that a passionate community like this is capable of more.
@jiffyclub I hate to say that this was also my perception as a first time attendee– quite disappointing.
@subsurface_life @KeckFutures I will see you there!
Dear Science Friends,
Go watch this. https://t.co/bwBP3L8Ch8
Number 7 hits home right now: The 7 biggest problems facing science, according to 270 scientists https://t.co/bNg6ZjTiTe via @voxdotcom
“Computer scientists do not [generally] get training in ethics, fairness, …” #SciPy2016
Ethical considerations come to the forefront when machine learning is used in the social sciences #SciPy2016 @hannawallach
@mollyoblong Sweet! That place looks awesome. Maybe Friday night adventure, @camille_codon
.@BuzzFeedNews publishes data + analyses in @ProjectJupyter notebooks on GitHub. From #SciPy2016 talk by @ellisonbg https://t.co/H9662jFB7g
Another huge turnout at #reproducibility session at #SciPy2016 for @andrewosh talk on https://t.co/84kj3KBlSM
Learning about the perils of changing default style parameters of @matplotlib v2.0.0rc2
For all my science+python peeps: https://t.co/zqQCjeB9o5 #timetoupgrade
From lightning talk: Focus on the good of python3– don’t shame python2 users #SciPy2016
Clearly reproducible workflows are a hot button topic! https://t.co/9Izg1ymkMi
Getting out of “dependency hell” for reproducible pipeliens with traditional build systems @jhamrick #SciPy2016
@tacaswell @danielballan Thank you! We were trying to search around on the internet– you were the easiest to find.
At 2: Bluesky–Experiments as Iterators: asyncio in Science by @tacaswell et al. #scipy2016 #reproducibility
Check out the mini-symposium on #reproducibility this afternoon! At 230 @jhamrick talking about pushbutton work flows in Jupyter. #SciPy2016
Declarative basis– perhaps new lingua franca?
Why a new Python viz tool, you ask?
A new statistical visualization tool from @ellisonbg and @jakevdp https://t.co/G2Ux9pkDjh #SciPy2016
@kylefrischkorn @ctitusbrown come to Woods Hole and I will buy you all the best you could ever want
@kylefrischkorn The question @ctitusbrown has been waiting for!
Time for @BokehPlots tutorial this afternoon at #SciPy2016 – excited to hear about Datashader and interactive plotting!
@mollyoblong PS: lost your phone number…
@mollyoblong I am in Austin for the week. Places I should check out? Music, food, etc.?
Dear Woods Hole friends: Go checkout @ctitusbrown Bio Seminar today in Redfield https://t.co/ksnkzaMJH1
@kylefrischkorn @shu251 ooooohyeah. #freeasabirdcaughtinawindturbine
@shu251 @kylefrischkorn I bet there are differences based on seasonality.
@kylefrischkorn If anything it will put you at ease– there was no bubonic in the subway.
Amazing paper title: Avoiding Pandemic Fears in the Subway and Conquering the Platypus https://t.co/kGKiQrRLu6
@ctitusbrown I think that @jamesrco, fellow ocean and open sci enthusiast, would like to meet with you!
@Chucklestuff @PolymailApp I am if it is still available
Niche partitioning and biogeography of HL-adapted Prochlorococcus https://t.co/2Fb4dcDQIK Implications for future ocean ecosystem structure
@ctitusbrown never thought 87 would look cool.
Timely call for vigilance in the design of machine-learning algorithms:Artificial Intelligence’s White Guy Problem https://t.co/OoCF7CZj7i
@cmdarwent I am sure I will become jaded eventually :)
@cmdarwent I am a foolish, recent New England transplant. It is too beautiful not to be!
Pool side reading in very hot (103F) Davis #labgirl #phdlife #twitter https://t.co/lOIBQbjQDt https://t.co/FigM6tL8NO
@Interior @CapeCodNPS @kathleenpitz have you seen them yet?
@kylefrischkorn @vincentflora @GordonConf What a great pair! Excited for it (though I guess I might just be a GRC attendee by then…)
@ctitusbrown sigh… can’t win them all. Hoping my french partner will forgive me.
In true computational fashion, a pull request (a là github) seals the deal. I am officially listed as a member of @ctitusbrown lab.
@betatim Very good music, obviously. ;)
@kylefrischkorn @ctitusbrown @virome_girl I am there! Who can say no to marine microbes and Tuscany?
Emergency evacuation from Antarctica successful! Amazing effort by the rescue crew https://t.co/UNxal95MAh
And so, dear twitter followers, enjoy the glimpse of my personal life while you can.
Encountering an interesting problem whereby Instagram is automatically posting photos on my Twitter. Woops… what did I do?
@ishthedestroyer @PolymailApp Seventeen by Sjowgren https://t.co/JTdoonITCZ
First album cover for the band we started somewhere in the middle of Wisconsin. #izi #summ… https://t.co/kNhr2HjdrQ https://t.co/mo18nrssPy
@ctitusbrown @byuhobbes Thank you! I am excited to begin work on some #MooreData problems with excellent people.
During an undergrad class on graph theory I remember thinking: “I am never going to use this.”
So. Wrong.
#buzzfeedified https://t.co/1YgfoLKF52
@ctitusbrown Yes, huge for us! Opens up housing options for me and I can only imagine what it is like for folks with dependants.
I am closely related to this one. It may not seem like a lot, but it will make things just a little bit easier. https://t.co/pBQ2BeRCSh
@ctitusbrown jealous!!
@ctitusbrown @GreeneScientist Yes, I know– we chatted about it. I did not post the article as a dig at you or as a hint for more $…
@GreeneScientist @HuffPostEdu So it is good to see others carrying the banner. Unions are key.
@GreeneScientist @HuffPostEdu I feel that I am too closely tied to the issue to speak on it without prejudice.
UC Postdocs are Worth $50K (and Then Some…) https://t.co/KmERSTO0dH via @HuffPostEdu
Ride fast @jvanderhoop!!! https://t.co/qXjocblAqJ
@kylefrischkorn status report?
Brainstorming conceptual figures about using Next Gen Data with the help of @google. First hit #StarTrek https://t.co/l84EVOQrsc
Diagnosing Deep Western Boundary Current Connectivity with @oceanslebrasi in 54-915 in 10 minutes! https://t.co/dL0vcb9gAO
@jvanderhoop Chickens track the things they love!
New album cover for @PistolShrimpBnd @oceanslebrasi @RebeccaHJackson @nlbeaird https://t.co/2UQeN3OjsY
@kylefrischkorn Rock it out!!! (Out rather smooth sails)
@kylefrischkorn @DyhrmanLab that was me obviously…
25th obit: Only I acquiesced to my mother in getting an EPIRB before solo hiking https://t.co/CZP80VBXU7 via @newyorker
Team @GreeneScientist ending the night having simulated data #barnraising https://t.co/QIQ43fwCV8
Digging @ctitusbrown analogy for metagenomics. Take a library, feed through paper shredder, photograph fragments, put books back together.
Or… Mixotrophy and toxin production? 🍔🍄 https://t.co/xd9bAqajL9
One of these things is not like the others. #izi #supremeeggcoop #eggcellent https://t.co/YJueexZd3S https://t.co/OM6qpajSZw
Res ipsa loquitur… https://t.co/Px5sWvWdmr
@ctitusbrown all I said was that the water was warmer than the air… and with that evidence I would guess my previous statement holds true.
@ctitusbrown [shurgs]
@ctitusbrown A dangerous statement… I just happen to have an extra 5mm dive suit.
But the water is warmer than the air in Bar Harbor. Want to go swimming @ctitusbrown? It should be just like swimming at Caltech…
The #barnraising I am attending next week is in Acadia. And I can’t walk. This is the ultimate test in #achilles rehab self-restraint.
#mondaynight #agricola with the Woods Hole Ladies Garden Club. #izi https://t.co/TmGHDfxtHo https://t.co/smMn8o9jEU
@TheEconomist @goodnesglaciers @jvanderhoop #chickengoals
Take away from biology seminar today: MIT/WHOI students are doing diverse and amazing things!
And finally @pHsquid is looking at impact of ocean acidification on squid development. Bonus of awesome illustrations!
And more on corals: microspatial heterogeneity leads to micorbial hotspots. L. Weber investigating potential links to bacterial virulence
#coralreef resilience in light of rising temperature? Hanny Rivera is looking at an #ElNino affected region to find out
Domoic acid exposure early in development? Timing matters! @jenlilio
Antibiotics resistance at the beach? @megkmay is checking it out on #capecod
Hidden Markov models to inform animal movement – great work by @braunianmotion. Keep an eye out for forthcoming R package
Meet the biology @MIT @WHOI students today at seminar!
Also, on a more personal note, preparing myself for a resurgence of the name Harriet… it is about time. #HarrietTubman
Excited for the #HarrietTubman $20! Honors an amazing #WOC with an even more amazing story. https://t.co/c72FHNyaQC https://t.co/o2X09DFJH4
Roof construction does not help my focus on writing.
Favorite resources, advice, blogs, etc. re: academic job application / interview preparation? #phdchat
NSF’s early career WaterMan award https://t.co/9uydUDBOtg clearly all are amazing scientists, but frustrating lack of diversity
A postdoc for a #bioinformatics enthusiast! https://t.co/2MQnbsWA7s
Happy Birthday @DyhrmanLab! I have melded two of your favorites: #StarWars and #phytoplankton https://t.co/uLTIpLb5SG
@kylefrischkorn @caleweissman #biggestfans #loveya
@kylefrischkorn @caleweissman We basically just hang out on twitter waiting for you to tweet.
@kylefrischkorn Is it in Massachusetts?
Taking a closer look at all that #MMETSP data (~50 transcriptome assemblies); Some great work by @monsterbashseq https://t.co/ClSkTyu0h9
@nekton4plankton Though I will say that it is not very crutch-accessible…
1000th Tweet: Just toured the R/V Armstrong. Really hoping to get myself on a cruise sometime soon. Such nice new labs! #WelcomeArmstrong
NYC-based folk, tonight @MRM_OCEAN is talking about her work on phytoplankton and #climatechange. Go check it out! https://t.co/Szp3rA7Ugj
Eukaryotic algae use different chemical variants of B12 than cyanobacteria https://t.co/T29kgIISfY https://t.co/HaPScB1O8Z
SST in Woods Hole is 6C…. I want to go swimming. Why is there no public pool in Falmouth?
New from @DyhrmanLab: Nutrients and their Acquisition: Phosphorus Physiology in Microalgae chapter in the textbook Physiology of Microalgae
Early micrographs highlight the beauty of the natural world #diatomsinthenews #glamorshot https://t.co/vLJp9uoUEy https://t.co/WNpHCZaMYc
@kylefrischkorn beast.
Elizabeth Warren surveying her bamboo, chicken kingdom #executivebranch #supremeeggcoop #i… https://t.co/eEFdwuF8gc https://t.co/q5BZA7CDJi
Aircast makeover by the coolest kid in WHOI biology. Much improved. https://t.co/wOoDDjihJp https://t.co/QbNQV4TZMj
Cast upgrade. Sticker credit goes to the coolest kid in the bio department. https://t.co/I8qJ4n1Glt
Design of a minimal bacterial genome: smaller than autonomously replicating cells in nature! @JCVenterInst https://t.co/0pFJmp3WxY
Achilles ruptures. Basketball. Yep. https://t.co/ZSRtagJh9M #dataviz https://t.co/sFaei5PJQL
Interested in #reproducibility in science? Consider submitting an abstract to #SciPy2016. Abstracts due March 25: https://t.co/9W5XNzBV8r
New paper from Ward & Follows @MIT_Oceans on blurring trophic lines: Mixotrophy increases C-flux and more! https://t.co/kgkViYaGNS
Biologists ‘going rogue’ and embracing preprints on the internet https://t.co/4o6CfL2TeY #ASAPBio https://t.co/YmMAPVmhY1
Even dinoflagellates struggle to adjust to #DaylightSavingTime https://t.co/ktpMOYFttW #PhytoplanktonintheNews
Happy #IWD2016 ! Throwback with some of my favorite #WomenInSTEM on a XC adventure on #InternationalWomensDay 2015 https://t.co/dlsRiXKuTq
Oh my goodness this is amazing! Ours would emphasize how we need to diversify our openings… @jvanderhoop @randal_olson @oceanslebrasi
Rehabilitation knitting count: 2 hats, 1 headband.
@strctlyfishwrap thank you Skylar!
@Collier_Lab_SBU thank you!
@ctitusbrown it is what we all want to know
@ctitusbrown sigh. Valid
@ctitusbrown what are they?
Yes, please. https://t.co/i8sUzhSigo
@biocrusoe I will be dancing like those letters in no time ;)
Meanwhile… I will be getting my achilles sewn back together
It is a pretty neat little story on diatoms in the Amazon Plume. Check it out tomorrow at 330
Just sent my completed slides off to @DyhrmanLab who will be graciously giving my talk at #OSM16 tomorrow in the Integrating ’Omics section
Anthropogenic climate change drives shuffle in N. Atlantic phytoplankton communities https://t.co/x1oprmHNlq
@marinebugs Deal! :)
Thanks, @marinebugs! Good guess, but this time it was basketball. Surgery this week!
Watching the live tweets roll in from ocean science and doing some data analysis… all while… https://t.co/ZsX1ACvxtN
@dohnemus A staple…
@ctitusbrown Casual lingo? As in trying to make things accessible?
@ctitusbrown Made my day better!
@ctitusbrown followed. I am honored.
@ctitusbrown touche. Maybe if you pair it with your Moore schwag.
@ctitusbrown Oceanographers like to party…
@ctitusbrown Picture or it didn’t happen.
@ctitusbrown I have tons of time to pour through the OSM listings now. #brightside
@ctitusbrown Also, sort of obvious, but I am curious to know what they talk about… https://t.co/2sPUbS6JnG
@ctitusbrown @ASDarwinist Check out the informatics under the index terms.
@ctitusbrown @ASDarwinist Yes, it doesn’t seem to be super user friendly. I was sort of going through by name and by general area.
This group of people are barred from @Jeopardy. #whoarecanadians, @jvanderhoop https://t.co/yxZwQMqwQG
@oceanbendy Oh yes.
18,300 applicants face 1-in-2,000 chance of being picked for astronaut job at NASA https://t.co/01feWwMlM6 via @GeekWire
@smith8272 best of puns :)
A freshly torn achilles is likely going to keep me from #OSM16… I am hoping that the ocean tweeps in attendance will tweet up a storm
@kylefrischkorn The print command is a powerful tool.
@kylefrischkorn Terminal knows all.
@jvanderhoop Totes printing out the Mars one :)
Metabolomic insights into cooperative lifestyle of R. pomeroyi: DMSP –> metabolic shift https://t.co/zlqVTPSEUA https://t.co/YxtCKdcev6
Loving the #scotus nomination nomination/decision #dataviz https://t.co/IHzt0GQRgr
@kylefrischkorn yes. That is an appropriate choice. PS: Loving the color choices in the background
Nice paper, @smith8272! Coordination of transcription shows synchrony between C-metabolic pathways in T. pseudonana https://t.co/lCIfdLKiWw
@kylefrischkorn coordinated shot count?
#WomenInSTEM have more fun: matching @Carhartt overalls + sampling #antarctic #phytoplankton. https://t.co/GElg9ciPcS
@jvanderhoop @goodnesglaciers @oceanslebrasi @JacquelynGill @guarnaschelli Sad truth…
An example of the triumph of basic science and collaboration #LIGO
@kylefrischkorn 4lyfe
@kylefrischkorn Taytay was my main squeeze during my final thesis hours.
Do not enter #woodshole #snowday https://t.co/qXVauBV5qo
@fonamental @smith8272 @EMBLEvents That, of course, would be amazing. I am excited to see how things progress after this meeting.
@smith8272 @EMBLEvents @fonamental Agreed! Thank you so much for the great conference.
Chemotactic response of scientists to ethanol cue collab by @smith8272 @blambert90 #science #dataviz https://t.co/I3tx0xtTrL
Loving the #biblical ‘prodigal son’ hypothesis to explain #evolutionary dynamics in phytoplankton by S. Collins #EESAquatic
@vincentflora @fonamental awesome! I will check it out
Wonderfully synthetic work by Bertrand and Allen on phytoplankton-bacteria feedback loop with regards to Fe #EESAquatic
@fonamental based off of talks given or the program?
A. Allen: metatranscriptomic evidence for colimitation of B12 and Fe in single diatom taxonomic group in S. Ocean #EESAquatic
Dancing with protist lovers https://t.co/cxU5pGzxu9
Great flash talks this afternoon! 6 of the 7 flash talks were given by men. (Yesterday was more even) #gender #EESAquatic
B. Jenkins: diatom community composition is explained (~90%) by Fe concentration #EESAquatic
@smith8272 @jamesrco @DyhrmanLab #propun
@blambert90 @smith8272 @Stebe69 I will keep an eye on Google scholar for it.
So great to see classic genetic techniques (e.g. knock downs) being used to characterize genes with biogeochemical importance #EESAquatic
Bowler: Can diatoms grow on siderophores? It appears species specific #EESAquatic
@jamesrco @DyhrmanLab I like it….
@allysauris happy to share!
@jamesrco @DyhrmanLab well, that transcription isn’t the best way to monitor physiological shifts in dinos
Brownlee: animal-like action potentials seen in diatoms and haptophytes. Why have one as a non-motile organism? #EESAquatic
@allysauris thank you :)
Genome to biome with @DyhrmanLab to kick off the afternoon session #EESAquatic
I hope the video gets tweeted! @blambert90 @smith8272 https://t.co/QIHMqtJtAI
Beautiful work by @smith8272 on diatom genomic organization and coordination of expression #EESAquatic
@nekton4plankton single cell viral genomic might fix this
W. Wilson: Many viruses that infect microeuks will get stuck on a 0.2 um filter– can be confusing. #EESAquatic
Go over time and they shut off the mic and projector. #EESAquatic
Flash talk time! #EESAquatic
Small changes in shape change the behavior in swimming direction; bet hedging at population level? #EESAquatic
Roman Stocker speaking on microscale interactions of the phycosphere. Guaranteed killer videos #EESAquatic
Re chromaveolate hypothesis: “When you move in with your partner you don’t keep both toasters for 500MY” #EESAquatic
Up to 6/20 today… Rough. https://t.co/gbh0swjZhe
Protistolgy humor at ours best #EESAquatic https://t.co/wTZTVfUMR4
@nekton4plankton ferritin #autocorrectdoesnotknowbiochemistry
@nekton4plankton movement of Fe to compartment mediated by ferretin?
@nekton4plankton acidocalcisome! Enhanced accumulation of Fe observed from nano sims
@nekton4plankton ferretin used to buffer Fe and maintain intracellular concentration
S. Merchant: Cells grown on excess iron sensitive to high light. Where does the iron go? #EESAquatic
Life as a Microeukaryote not so glamorous after all… https://t.co/SyS4UKsaU2
@jamesrco valid.
@jamesrco that is the dream… Stinks to be human.
Cryptophye community determines blooming of Mesodinium in the field? M. Johnson @WHOI #EESAquatic
@mikerappe yes, I am pretty sure that attack actually took place in Germany.
S. Hess showing unbelievable movies of microscale voracious raptors decimating their hosts. The microscale is a rough place… #EESAquatic
R. Foster: inverse correlations between two different N-fixing symbionts (het and ucyna); partitioning? #EESAquatic
Day one of microeukaryotes meeting done. #EESAquatic @ EMBL https://t.co/P7mw6vve3M
@kylefrischkorn @selenagomez found her! But where is Beyonce??
.@smith8272 is winning #EESAquatic Twitter right now https://t.co/idGOpO199p
Amazing talk by Ben Lambert (@MIT / @WHOI student). Totally revolutionary! #EESAquatic
@smith8272 nice (re)combination of trending hashtags
@KellyCanesi it was such a wonderful experience! Meet great people and stimulating conversation. Thank you @MooreFound for the opportunity
Eye-like organelle on a protist?? https://t.co/4JPYhgmTDd
Love the idea of oceanography 2.0 #citizenscience https://t.co/5BEr2A82Jg
De Vargas: Symbiodinium is all over the TARA v9 dataset. Similar to what I saw in our St Aloha metatranscriptome data #EESAquatic
Karsenti: co-occurrence >> exclusion in marine communities revealed through @TaraExpeditions data #eesaquatic
~235 microeukaryote lovers in one place, amazing gathering #EESAquatic
Live twitter feed at the Aquatic Microeukaryotes meeting! Excited to start #EESAquatic https://t.co/ONP1mHaK4r
@jvanderhoop LOVE the infographic at the bottom. I think we should print it out for the ladies– inspiration and what not.
Shredding is the best jet lag cure. https://t.co/ozF7Za4hNx
Pre-conference skiing at Saint Anton Arlberg with Katie. @ St Anton, the Alps https://t.co/Dkb0MWmgPs
Multidecadal increase in North Atlantic coccolithophores and the potential role of rising CO2 https://t.co/x4frbxAgG0
“The spatial pattern of fluorescence yields suggests that photochemical energy conversion is physiologically limited by nutrients.”
The fate of photons absorbed by phytoplankton in the global ocean https://t.co/gBQ2C4GycF ”
@ctitusbrown video conferencing almost one, but the DIBs did a great job of persevering.
They are hard to observe @jvanderhoop https://t.co/mlRSednjKO
#Phylogenetic (phylotextual) analysis of anti-evolution legislation/#dataviz double entendre https://t.co/0b0BULkgB5 https://t.co/CboVVDijCE
@caleweissman learn good @kylefrischkorn
@kylefrischkorn And a merry Christmas to you, too, sir. I hope you find your karaoke.
@ctitusbrown Wow!
@jvanderhoop my awesome windsurfing socks gave me power!
Baxter may find my thesis is soporific, but I am feeling ready and excited to defend it tomorrow.… https://t.co/0z6wZ9IuNZ
Matt Dameon is speaking at MIT commencement this year. I am graduating. Do you think he will sign my potatoe? https://t.co/s2egL4h4GK
For those who want more about E. huxleyi check out this fantastic story by @mesoplodon that aired on @Radiolab https://t.co/8qAfCIMAEE
Putting together my thesis defense talk and have to share this photo. E. huxleyi is amazing. Image from @NASAEarth https://t.co/Cy21OSwZD5
@titus_unplugged Well, my RTs strongly correlate with PO4 at least ;)
@nekton4plankton RTs correlate strongly with PO4– pretty interesting.
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages https://t.co/dk13oE5noW
Love over the last week from my thesis support team. #phdlife #turneditin https://t.co/afsu2cWmdF
I tend to stick to science, but this is important: How Australia Ended Mass Killings https://t.co/3Z1JnBVeYV https://t.co/ThNouq6HWr
Defendable draft is into my committee– T-2 weeks until it is time to defend my thesis!
@jvanderhoop @hgoldstone @oceanslebrasi you should send her a photo of one of our masterpieces!
Thank you, #github for rescuing my entire dissertation from utter distruction. Seriously.
“Lastly, I thank #pumpkintheracoon for her support during the latex formatting portion of my thesis.” #phdlife https://t.co/QA6fceanaG
@jvanderhoop that sounds like a good start.
@jvanderhoop I can’t see emoji #2, but I totally feel #1.
.@jvanderhoop Inspiration for your future papers on whale abundances https://t.co/oO9xzXizeG
@titus_unplugged, well, make my friend take it out ;)
Is it okay to have a humorous statement in a footnote of the introduction to your dissertation? #AskingForAFriend #phdchat
Elena is a crafty little chicken…
Sent a photo of a not-so-sick, sick chicken chillin’ in your room. Thesis due in 6 days… #phdlife #rural https://t.co/vJZFJfgrXe
@jvanderhoop @oceanslebrasi #googlescholarrecommendations
The coffee-machine bacteriome https://t.co/TL1FXpZGpp What about french presses, @jvanderhoop @oceanslebrasi? https://t.co/eMhs3Fttu8
Yep, pretty accurate. Particularly the premature “I’m the boss” stage in matlab https://t.co/xJcUxp2Tcv https://t.co/BJ8r599vYc
A how-to guide for biologists working beyond the lab/field: Computing Workflows for Biologists: A Roadmap https://t.co/rjzVZTwc4m
Another haptophyte genome sequenced! https://t.co/c6OGleh2nl
Field observations of coordinated gene expression and enzyme activity making my day.
Truth: Comic Explodes the “DNA Is Just Source Code” Metaphor https://t.co/e2c0nE06gP @TechReview @xkcdComic https://t.co/QSNZZ9iaKM
@titus_unplugged … yeah. Stupid perhaps, but it just looks amazing.
I have been on several cruises for graduate research, but not one in the N. Atlantic even though it is right outside my office.
Amazing photo from @NASA_NAAMES taken in the N. Atlantic. https://t.co/7XAFTeZma8 https://t.co/KtFOttMVeA
Writing my thesis to the gentle buzzing of Redfield roof construction.
@dbiello True, we might need it. I am just not sure that marine ecosystems do.
@titus_unplugged Fe fertilization will disrupt marine ecosystems. Probably won’t do much in the way of mitigation.
@titus_unplugged Humanity’s hubris shining through. We do not have a good history of effective geoengineering (imo)
Nice article, but I do not think geoengineering is the best course. See: https://t.co/prX3M0bOYR https://t.co/iV6KgZbxVs
Pan-transcriptomic analysis identifies coordinated functional modules in diatoms T. pseudonana and P. tricornutum https://t.co/kf229TOtIt
Chilly 7C shred at Waquoit. No feeling in my fingers no crowds. #photosbyizi #iztagram #windsurf… https://t.co/Aegsfae5HS
@ChalkyOceans @HarrietSCole You (and phytoplankton) are our link. Clearly you are the coolest person ever.
+brewing ginger beer +cold temperature windsurfing https://t.co/8vRkKK4889
@HarrietSCole Hello! Two Harriet’s who study phytoplankton… chances seem small.
Poor read counting –> underestimating DE? : Union Exon Based Approach for RNA-Seq Gene Quantification https://t.co/qHV3c5Uqv5
A bit of a gale in #woodshole but nothing like this: https://t.co/YunWynD7OY
@jvanderhoop I am working on my design right now.
Super exciting news!! @ProtocolsIO will support bioinformatics protocols @DyhrmanLab https://t.co/CQMvtvI7rY
Each so different. <3 diatoms https://t.co/rWOfRzDn9R
Phytoplankton are responding to #ElNino. Check out difference between October 2014 and 2015: https://t.co/rF5fb6qfrH https://t.co/XHgZobRu9V
@ctitusbrown @AGU_OS Yes, we are quite friendly!
Just what I was looking for this AM. Thanks @byuhobbes: Understanding RSEM: raw read counts vs expected counts https://t.co/K4SoxZSMlS
@nekton4plankton Photo credit @BournePD
Cranberries covering the roadway, blocking traffic over the Sagamore bridge. #capecodproblems https://t.co/e1wDQtSOL2
@oceanslebrasi More time for windsurfing!
@Paul_Carini Thank you!
@camille_codon @butterflyology @dylanbstorey @blahah404 So excited to try it out!
Writing my #thesis like. https://t.co/qiZLkobNLk
A Chemical Perspective on Microalgal–Microbial Interactions https://t.co/GJ3JNlwXue You might be interested in this @KujLab @DyhrmanLab.
“Alpha males are the problem. Alpha males need to be part of the solution.” Re: sexual harrasment in academia. https://t.co/8SNH1flD5j
@ctitusbrown Thank you! Application things… and I was a bit surprised.
@ctitusbrown What is your department? Website confusing… Population Health and Reproduction??
Great paper, @clfiore1! Release of ecologically relevant metabolites by the cyanobacterium Synechococcus https://t.co/WQct1yBWFg @KujLab
As someone who filters a lot of water: Standard filtration practices may distort planktonic microbial diversity https://t.co/1B4Ik1ly3P
@hvmoeller @emoceanographer It is kind of the most awesome thing ever, no?
The future of fish forcast by #MITWHOI student @emoceanographer: https://t.co/3YI6J2hE8N
.@kylefrischkorn has been hanging out some morbid birders. Nice article, Kyle! https://t.co/4lyJdTs8NE
Why Bioinformatics Analysis Is Not Free - https://t.co/KBLn7Jq664 via @Massgenomics
#chickencostumesarenecessary @jvanderhoop @oceanslebrasi @goodnesglaciers https://t.co/kEXvzpccjc
@kylefrischkorn Perhaps the Kahlua in the cabinet?
Welcome, @oceanslebrasi to the bright, scary world of twitter. #FirstTweet https://t.co/CFqxEuCAm9
@oceanslebrasi Hello, Isabela.
Oh @Wellesley, giving me the feels on a Friday. #thewellesleyeffect is real. https://t.co/I2HhRQPBa0 #mothership
There is so much we don’t understand yet: Hunting the Godzilla El Niño https://t.co/nJwE8jB9AP
Warming Oceans May Threaten Krill, a Cornerstone of the Antarctic Ecosystem https://t.co/xNkfFlBja9 @nytimes https://t.co/WxCZgOPOoy
Makes up for Sunday #thesiswriting. @ Woods Hole on Cape Cod https://t.co/LLN6CG8ulk
That was a heartbreaker. @Scotlandteam, it should have been yours. Unbelievable.
Diatoms are pretty good at responding. https://t.co/VMyUjZz8Mx
Keep the Northern hemisphere in it, #Scotland! #SCOvAUS
#thesiswriting… I promise.
My roommate is the coolest: @jvanderhoop killing it in NH! https://t.co/rchNMyPqgV
I know what the laydies and I will be doing this weekend #guinessworldrecords http://t.co/wFNjTCfcD0 @jvanderhoop @goodnesglaciers
.@jamesrco I hope you tweet while in Antarctica! Safe voyage.
@jamesrco Agreed.
Balancing beauty and communication: Taking Data Visualization From Eye Candy to Efficiency http://t.co/ELHtWNCRjY via @NatGeo
Preprints called on to support controversial talks http://t.co/FNgDON34O4 via @NatureNews
Climate cycles didn’t shape ocean’s abyssal hills http://t.co/R33VKNOkKK Nice @jao117!
I appreciate the importance… but it is quite reminiscent of the pigoons from @MargaretAtwood Oryx and Crake. https://t.co/T08sOzfWqO
@camille_codon @ctitusbrown Incentive to start skyping in to lab meetings!
Love this photo: biomass (diatoms…) on a 5micron filter from the open ocean (incubation study). https://t.co/sKXz7tAKLB
Is the NB winter-spring bloom reliant on sewage input? 2/2
Wonderful talk on the “Goldilocks” issue of N management in Narragansett Bay by Ketchum Award winner Candice Oviatt. 1/2
Suns out in #WoodsHole! My inner child and I will be hitting the beach this afternoon for a celebratory shred sesh #NoChildLeftInside
Feelin’ the love @kylefrischkorn! Thank you. – Harriet ‘ocean goddess’ Alexander
UC Berkley should listen to their own #Astronomy department and show Geoff Marcy the door. https://t.co/Nrp0KQIFqu
Paper on phytoplankton functional group-specific traits and bloom formation out today http://t.co/OsIzz2K6NH http://t.co/qqALkXPMHI
@mrgunn Redcurrant?
Number two in my cohort of biological oceanographers is up to bat! #almostphd Choreography of belonging! Go Nico! http://t.co/fS0Adlnnhg
@larysar Kangaroo, actually. Southern hemisphere, you know?
Chasing #krill and looking for sea ice in a Fjord in #Antartica at 3AM #fieldphotofriday #FBF http://t.co/hnm4z2i7l1
@kylefrischkorn @MRM_OCEAN Sonya presented some of y’all’s work at ocb trait meeting
@ctitusbrown there is talk at the ocean carbon biogeochemistry trait based ecology workshop on how we should include soil ecologists.
We are really only hindering ourselves by hording data. #opendata #openscience
One of the main final points of #2015OCB_TRAITS is similar to @EarthCube rcn: the need for cyber infrastructure for open data.
@KujLab yes, I admit a slight bias on my end…
@KujLab right! Put the biology back in biogeochemistry!
@DanielReedOcean Victoria’s? Not yet I don’t think.
Really amazing talk by Victoria Coles on her work integrating ’omic data into biogeochemical models. #2015OCB_TRAITS
“Organisms don’t align themselves along biogeochemical gradients; they generate them.” - Victoria Coles #2015OCB_TRAITS @KujLab
Trichodesmium getting some love. Cool with @MRM_OCEAN @kylefrischkorn
Leader of the @DyhrmanLab preaching on the connection of molecular studies to trait-based ecology #2015OCB_TRAITS http://t.co/IZjrBMVjNl
Susanne Menden-Deuer bringing in game theory to address the paradox of the plankton #2015OCB_TRAITS http://t.co/LIVx2cNkrb
Perhaps equally true in molecular ecology? https://t.co/Ysnqon5Man
And now for competitive pin the trait on the Stommel diagram! #2015OCB_TRAITS http://t.co/GPYuPIhRwl
Main point from the afternoon at #2015OCB_TRAITS: things in the ocean move… a lot.
Time to chat #phylogeny and traits. #2015OCB_TRAITS
Great talk this AM by Karen Stamieszkin on modeling copepod fecal pellet formation. Curious to read her paper: http://t.co/bbBoKqRaWn
So true… Last Friday, eh @kylefrischkorn @DyhrmanLab ? https://t.co/dCFw8mh40S
Super excited for #2015OCB_TRAITS plenary today by Elena Litchman.
Funding challenge is central: modelers need data that is not super exciting (or fundable) for experimentalist to collect. #2015OCB_TRAITS
Interesting point: in oceanography we tend to muddle theory and simulation. #2015OCB_TRAITS
@US_OCB sounds good to me!
On a related note, is there a hangtag for this meeting? @US_OCB
Question of the afternoon at @US_OCB trait-based approaches workshop: how to bridge the gap between observational and modeling approaches?
Check out the @WHOI booth at #SUBMERGENYC tomorrow! Emersion suits will be on hand to keep you dry during the gale. https://t.co/x5U4JdWPmg
The ocean is one giant reservoir of antibiotic resistant genes http://t.co/b1kJPf6ewv
Skype 1. @DyhrmanLab 0.
@kylefrischkorn Needing so much coffee right now.
@kylefrischkorn Try harder!!!
@kylefrischkorn I sensed danger.
New children’s book: Margery, the Curious Polar Bear and the CTD http://t.co/Uru9lqKhiT @kathleenpitz
Sage advice re: productivity. This Strategies for being more productive with fewer hours http://t.co/wOmkmnQyhn via @DynamicEcology
Microcystis– what is driving you? https://t.co/NnHpWc3R6z
#Glaciers aren’t the only cool (hah) thing in Greenland. Fatty genomes! http://t.co/hx3wLzeHzi @goodnesglaciers @RebeccaHJackson @nlbeaird
The R/V Neil Armstrong is now official @WHOI https://t.co/fRm57lHTEN
Thesis defense scheduled. T-84 days.
Abstract in for #OSM2016 to the Linking ’omics session. Looks like a great lineup so far!
@ctitusbrown @blahah404 @camille_codon Post-thesis-writing, that is…
@ctitusbrown @blahah404 @camille_codon That is what I understood from a quick look over… I’ve got mega-metaT data to check it out with.
New stuff! Exciting. https://t.co/qd7b1nxDXn
Petty tyrants empowered by homeland security dictate gender for us. Anatomical “anomaly.” We are beyond this. http://t.co/1CVma3zcQO
The Riddle of Rip Currents https://t.co/Iwf1jVtEjG
@jvanderhoop @nature #captainplanktonator
Goodness, @goodnesglaciers! https://t.co/GAc8CAcaD2
Infuriating. I hope this horrible incident doesn’t quash his motivation and passion for invention. https://t.co/Z1QABDIn9y
Waquoit Monday shredding. Strong wind and no waves: perfect. https://t.co/AsecBjfVB6
@kylefrischkorn his skill set from “I am legend” stands for itself.
@kylefrischkorn Do you think he wants a lab T-shirt?
Have I mentioned that my advisor is the coolest? I am now one-degree from #willsmith https://t.co/fEspORc7cJ
On a more depressing, though unsurprising, note http://t.co/xWB4wGOlc6 #Antarctica #climatechange @ScienceAdvances http://t.co/xvmk0j14pF
Early #davaviz by Florence Nightingale saving lives. Pretty nice. https://t.co/zTLKzAkYsc
@daniellegruen @kathleenpitz engineers are naturally good at improvisation.
Take note MIT friends. Please be safe! https://t.co/W8DZdNL7al
@sondy Never tried that one before. Perhaps %precision %.2g: prints nums than 1e2 in scientific notation. Not sure about the actual mult.
@AstronautAbby @Wellesley Brings me back… Have a good Flower Sunday!
Watching @wsl women’s round 4 and editing thesis. http://t.co/ti6tgPw96J Hoping @DyhrmanLab is having a great time out there!
Paper accepted, fellowship submitted, and beautiful wind. It is a good Friday. #windsurfing http://t.co/uv1Y0idMQ3
Perk of being an oceanographer: you have foul weather gear stored in your office for rainy days.
@jvanderhoop So much love ;)
@jvanderhoop Yeah you are!!!
@jvanderhoop NO!!!!! You got this, #postdocsuperstar!
As I write this fellowship proposal, I can only hope Stommel is still right…
“We can count ourselves fortunate to live in a society and at a time when we are actually paid to explore the universe” - H. Stommel, 1974
Interesting: http://t.co/NbP6dkA0V2 I am still not one for global geoengineering (esp. ocean fertilization)
@drdrewsteen Writing a proposal for a general audience right now, and this seems quite appropriate.
Day 2 of @WHOI @swcarpentry : morning = intro to python; afternoon = ipython notebook and some of the @datacarpentry python ecology lab!
@kathleenpitz Gambierdiscus is a bit of a goldilocks? #ciguatera #needspellcheck
@ocefpaf @swcarpentry @WHOI @rgaiacs Yes, we have quite a nice gender balance! (and all female instructors/helpers)
Getting started on day one of @swcarpentry workshop @WHOI. http://t.co/1Wi1nac810
Also good for #cinguatera? Releavant to the cool work @kathleenpitz is doing out in HI https://t.co/yb4yDngAKD
@nekton4plankton Even when moved back to lower CO2, high-CO2 acclimated maintains heightened rates of N2-fixation #climatechange
Super interesting: Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated CO2 http://t.co/ReX3Ke0f6F
Post-its and name tags acquired. Getting excited to teach a @swcarpentry workshop tomorrow at @WHOI!
My main question: “ecological preserve or an economic engine?” US Seen as Laggard as Russia Asserts Itself in Arctic http://t.co/3tzbelBudf
Excel to the rescue! https://t.co/ml8rfqbcTS
We need something like github for data and for peer-reviewed papers #ecogeoRCN
It is a huge problem. https://t.co/3adE9TglS8
“Problem with current infrastructure is a lack of dynamics.” There has to be versioning @lteytelman #ecogeoRCN #bigdata #openscience
Learn something new everyday: http://t.co/dBFSEvOwTM has nice search functionality for the sra database #ecogeoRCN
@nekton4plankton SRA is pretty good– but oceanographic data might be beyond their scope.
Question: how much can we (the environmental community) leverage #NIH resources? #ecogeoRCN
@nekton4plankton D. Stanzione: Might not need one spot, but data volumes need to be considered. Moving data costs money. #ecogeoRCN
From Scott Gifford “Is there hope for having databases for our environmental sequence data?” #ecogeoRCN
Nice point @lteytelman: not everyone needs to be a computer scientist, but computer literacy is vital #ecogeoRCN
#ecogeoRCN problem: simple data discovery is limiting our progress. @EarthCube
“To be at the cutting edge you have to do some amount of coding…” #ecogeoRCN @EarthCube
#ecogeoRCN For what level should data resources be designed?
@lteytelman @EarthCube @ElishaMariePhD unfortunately very true.
Problem: what data standards can help integrate genomes into global-scale models? #bigdata @EarthCube #ecogeorcn
Check out the live stream environmental ’omic webinar https://t.co/s8xImiLb93
Too true #openscience https://t.co/2rqx0MI9Py
Revolution not evolution.
“I expect you to have 2 or 3 failures out of 10” relevant @ctitusbrown
Inspirational talk at #NSF RCN by former @NASA Administrator Daniel Goldin on the importance of risk and failure in scientific advancement
Spotted from plane near Hawaii: massive Trichodesmium bloom! Forgive the awful phone pic @kylefrischkorn @DyhrmanLab http://t.co/SiCuhpkPLk
Makapu’u. Swim number one on my tour of Oahu’s beaches. @ Makapu’u Beach Park https://t.co/bs3iHnaTOR
“I like my work and I like my life, and I enjoy doing it” Walter Munk, ‘Einstein of the Oceans,’ at 97 http://t.co/7uKvhBKjcw
‘Serious Academics’ at Play https://t.co/66YLwqJwNa via @chronicle
This might become the strongest El Niño on record. Perk: rain for California http://t.co/FE6aa58ATi @NatureNews
Looking quite antiquated, @Olympics. Men can swim the 1,500 in the #Olympics. Why can’t Katie Ledecky? http://t.co/7gUXPcPCsV via @slate
Idle desire to run #R in #ipython notebook turns into 3 hours of updating and troubleshooting. #phdlife
Massive bloom of Pseudo-nitzschia (diatom that makes a neurotoxin) in the N. Pacific https://t.co/ho7p6M3RvS #HABs @NOAAClimate
@ASDarwinist sorry to drop you… 140 characters just isn’t enough
@kylefrischkorn This definitely puts us within 2 degrees of Lady Gaga and Beyonce. Sonya–> Stephanie–> Rolling Stone–> Fame
#Phytoplankton grace @RollingStone in article about #climatechange article featuring work from @MIT S. Dutkiewicz, @DyhrmanLab, et al.
#CanadiansDoItBetter @jvanderhoop https://t.co/Zf4aA1tNv1
Reporting from an icebreaker! Check out @scifri to hear about glaciers from @fstraneo and @mesoplodon https://t.co/vbn68iP8LK
@jvanderhoop Take good notes! That is my favorite topic ;)
@kylefrischkorn always knew that Neptune was a ginger.
@DyhrmanLab it is clear that @kylefrischkorn had angered Neptune . He’s got a strong correlation (n=2) with Pacific cyclones…
Needing status update from @kylefrischkorn @DyhrmanLab. Still afloat? Plankton cooperating? Send message by tweet.
Oh my goodness @goodnesglaciers !!!!????? https://t.co/Z7CnGC7Pm2
@kylefrischkorn I am sated.
@kylefrischkorn the emojis help
@kylefrischkorn amazing!!! We saw next to nothing when we were out there
@kylefrischkorn sigh.. I will channel my inner patient self
@kylefrischkorn but you can Mason?
@kylefrischkorn what kind? Details!!!
@kylefrischkorn where are the pictures
@kylefrischkorn mine, too, Sonya.
@kylefrischkorn love
@kylefrischkorn you got this.
@kylefrischkorn doing me proud.
#FBF 3AM CTD cast shenanigans at St. ALOHA with @MRM_OCEAN and @DyhrmanLab Carry on the tradition @kylefrischkorn! http://t.co/1qYxHUhh18
Phytoplankton in a changing ocean… change, too! http://t.co/HZxCHBrjZ2
@kylefrischkorn womp womp… no factorials? 4!
@kylefrischkorn Elaborate…?
GOOOO @kylefrischkorn GOOOO!!!!!
@kylefrischkorn I recall not needing to tag the CTD and there being a very exciting tire stabilization system involved…
@kylefrischkorn Deck chairs ftw.
Sending Lady Gaga by carrier pigeon. She should be there in the next few months depending on wind speed.
@kylefrischkorn wooompwooomp.
@kylefrischkorn To Sheean: one [mhahah], twwwoooo [mahahah] http://t.co/GKYlTlkx7I
Phytoplankton–bacterial interactions mediate micronutrient colimitation at the coastal #Antarctic http://t.co/lUG0uUcgEW @PNASNews
#TeamDyhrman continuing their North Pacific sample fiesta as part of the SCOPE cruise #beastmode https://t.co/VrVQJGcEy5
If my most important collaborator is my future self, then why did my former self systematically eat all the chocolate in my work trail mix?
@kylefrischkorn What kind??! Pictures or it didn’t happen.
@kylefrischkorn @DyhrmanLab Ah, those bottles and I have had some good times.
To figure out what we might contract from the ladies (w/o antibiotics) @goodnesglaciers @ggoldleaf @jvanderhoop https://t.co/OYFPWE16ms
That is the dream! @KujLab @DyhrmanLab https://t.co/0p78Sy84Y7
Great talk from Jill Banfield on taxonomic binning. Watch #CAMRws remotely here: http://t.co/aFImJBxjKK
@kylefrischkorn Blood. Everywhere. But, makes for mighty good eats.
@kylefrischkorn Sounds like a cruise.
Missing out on all the @DyhrmanLab fun! They are out for the next ~12 days “SCOPE”-ing out Station ALOHA. #ocean https://t.co/E1BKuRfZkN
@kylefrischkorn Looks just like I remember it!
Ocean acidification impact on #phytoplankton communities! Great new work from @eapsMIT http://t.co/1tciEau5KC @NatureClimate
@kylefrischkorn 1944 Mai Thais are the best cruise prep.
Miss you, too.
@kylefrischkorn @DyhrmanLab Is that for real?
Beautiful! https://t.co/a1iffZbnwX
Wonderful reactions of a very hardworking team! https://t.co/uNvyDd3lag
@AshleyEMaloney Together we will make #Diatoms trend.
Ooomph. Hoping for cooler weather this week. https://t.co/CO1FYix6pv
Off to the Molecular Life of #Diatoms meeting. Ready for some glamour shots, e.g. corethron voguing in #Antarctica http://t.co/tE8WdHHnxN
@DyhrmanLab Did someone pack the fake mustaches? Key for good science.
Pretty amazing. Scaling up nanoscale water-driven energy conversion into evaporation-driven engines and generators http://t.co/wXoKqExiG3
@kylefrischkorn Look at that clean band!
It’s a great day for #oceancolor! #SatellitesAreAwesome #PhytoplanktonArt http://t.co/Vm7zuxeWjU
Beautiful phytoplankton blooms in the North Sea https://t.co/vIaYRK0HqK
Making @kathleenpitz ’s research super relevant! https://t.co/Fr8e23VGW2
My advisor, @DyhrmanLab, looking ready for the Ocean Acidification panel https://t.co/DMUE1eNGDm
Chisholm, Rivest, and Thompson appointed as new Institute Professors | @MIT News http://t.co/TXBkVomEVF #Oceanography
@kylefrischkorn #GlitterIsGlitter I sense a costume change coming for #SCOTUS @ladygaga would approve.
I never thought this day would come. #LoveWins #SCOTUSMarriage
@statsforbios Hah, no. Just under construction. If only I were secretly cloning dinosaurs or the like.
Excited for the game tonight. I have a feeling #Colombia is going to come out strong. http://t.co/TVrxnwOW4i
The #Arctic is changing very quickly– and it is right in our back yard. https://t.co/DTfzvjas6i
Twitter explained for academics: https://t.co/SiqwdYMhJT For you, @KujLab. Happy tweeting!
Sad truth. #TimHunt https://t.co/6hkQOukKo5
@kylefrischkorn Is this a real thing? Gah.
@nekton4plankton Amazing to still be finding novel lineages!
Unusual biology across a group comprising more than 15% of domain Bacteria http://t.co/CpDGVujHng
“If you’re doing good science, if you’re a great teacher — that’s what matters.” #OutInSTEM #LGBT @kylefrischkorn https://t.co/HIUeLckrFg
@kylefrischkorn Also, surprised you didn’t tag Beyoncé…
@kylefrischkorn Welcome to the family, Blue Ivy.
@LexFischer So distracted.
One month in #Antarctica. Condensed. #science https://t.co/paV6zi7NdA
@goodnesglaciers @Wellesley @MIT @reddit_AMA anytime, my friend
Check out @Wellesley grad/ @MIT student @goodnesglaciers @reddit_AMA about ice and being an awesome glaciologist https://t.co/RLaJLjKuDQ
Thank your #plankton! Watch the video. Seriously. http://t.co/5l9OVBlmMX #grateful https://t.co/TzADTZNkP4
Vanishing lakes in greenland! Great new work by @goodnesglaciers http://t.co/SJyG7NfTdK @WHOI @eapsMIT
@kylefrischkorn t=1:00 is my new #bioinformatics power pose.
@kylefrischkorn is this a thing? If so.. yes.
What a fantastic choice! https://t.co/VcBtsq6GuD
And disappointed to learn that the results might not be true from an #LGBT standpoint. I thought it was a sign of progress.
Unfortunate. Underscores the need for #opendata and changes to hiring practices re: publication records. http://t.co/yaBqrXmdNs @NYTScience
Beautiful cover of @sciencemagazine this week! Love the #plankton. #TaraOceans https://t.co/8idtJkz0dK
@kylefrischkorn #overlyhonestmethods
@kylefrischkorn It sounds like a part of the MM that should be added. Music jammed to during the extractions.
@oceanbendy Saw this project and thought of you… of course you were already on it!
@goodnesglaciers @jvanderhoop @ggoldleaf Bike pannier chicken beach day. Things to investigate: chicken helmets?
@goodnesglaciers That is right @jvanderhoop, eventually we will need to adopt the neighborhood pig to herd our chickens.
Relocation. First morning in the #bambooforest @jvanderhoop @goodnesglaciers #woodshole http://t.co/Y8D5YvbDc8
Piecing together the phosphorus cycle! tldr; P redox cycle is important! @DyhrmanLab @sciencemagazine http://t.co/j4N83Ldy48 #phosphorus
@kylefrischkorn Don’t you mean Nemo, Pinto and Santa Maria?
@kylefrischkorn #getalltheplankton PS: I am voting for your triad of dewar names.
Phosphorus might be the ultimate limiting nutrient https://t.co/gfAJqGV0lW
New study ‘fingerprinting’ our microbiomes. Raises some interesting ethical questions… http://t.co/1SjBEMsvwu #microbiome #bioinformatics
@jvanderhoop @mitcyclingteam Woopwoop! Way to go!
Bike fast! @jvanderhoop https://t.co/TQE8FgstTS
@Paul_Carini @DyhrmanLab Who could forget the banana? Best venn diagram viz for genomic data
Awesome News! https://t.co/sN3ew3G7cd
@gabepratt Not totally sure if I can imagine it, but I might give it a try. Thanks!
@nickschurch @statsforbios Curious to see what you mean. Thank you!
Any good alternatives for visualizing venn diagram type information across >4 categories? #dataviz #datavisualization #python
@mitcyclingteam @nikolhaustweets @JetBlue Oh no!!!
Atlas Scooped #AcademicNovel
Capitalism at its best.
@LexFischer @jvanderhoop Yes, @xkcdComic is siding with the biologists!
@kylefrischkorn If you turn on the UV light in there you might be able to emulate a suntan (or at least a ginger burn)
Fjords soak up a surprising amount of carbon http://t.co/1NQjYQMRZj
@kylefrischkorn We have rounded quite the corner. Sonya is embedding tweets in her talks.
@RallidaeRule Yeah, both of our families moved to fay at the same time. Adaire and I met in Sunday school :)
@kylefrischkorn Mmmmmmm. Out reach goodness. #stache
@RallidaeRule Hey! Saw your tweets via biotweep. Small world: I think I grew up with your advisor (father of my childhood best friend).
@Paul_Carini @DyhrmanLab Thank you!
Truth @kylefrischkorn https://t.co/a3BNSKJ18b
@kylefrischkorn @DyhrmanLab Oh my goodness! I am so happy you are at her talk to live tweet!
@kylefrischkorn like filters in the wind #parkinglotscience
@LizKujBehn @DyhrmanLab Thanks, Liz!
@kylefrischkorn UGH! You got lasik eye surgery!! I forgot. Ah well, at least the mustache holds true….
#brewer2mpl meets Wes Anderson. Gene/transcripts by Iso%… or #GrandBudhapestHotel polkadots #dataviz #python http://t.co/jwik7Uuhc8
@kathleenpitz Where is the before picture for this year?
Sowed our garden on this beautiful Earth Day! Hopeful for a melon to survive vole army this year… @kathleenpitz
@LexFischer Me too! Do you also look for a complex series of glands in a partner?
We aren’t the only curious creatures MT @jvanderhoop Rare Sperm Whale Encounter with ROV http://t.co/06UCghQYJY @EVNautilus #nautiluslive
@jwheeler91 Luckily not millions… but enough to disturb the Force.
Do not rm -rf * when tired. Forever is forever. #gradschoolproblems #commandlinewhoops
A really nice profile on Mick Follows, including his path to science: An ocean of opportunity https://t.co/yJg4PDS1dd
@kylefrischkorn Thanks, Kyle!
Paper is out in early edition! Metatranscriptome analyses indicate resource partitioning between diatoms http://t.co/MYsTP17pyf @PNASNews
Male bloggers should add the suffix “hunk” to their internet handles. It lends credibility. http://t.co/2DZegHxJv5 @BrianLehrer
Can Climate Scientists Make A Difference by Not Flying? http://t.co/yJ644NlHtK @ClimateCentral @blkahn Yes. individual action is required.
Sexual selection in our time. Woah: Did natural selection make the Dutch the tallest people on the planet? http://t.co/FuAhKm4Jgg
“While it seems like the whole world is obsessed with ‘Orange Is the New Black,’ I’m living it.” http://t.co/mu8BsPT1RM
Might be time to make some s’mores RT @HoneyMaidSnacks We believe love is always welcome. #Indiana #ThisIsWholesome http://t.co/nKNeop0oGl
@kylefrischkorn Now that is just cruel.
Beauty of the wanderers MT @MontereyAq The tiniest animals in the sea never looked so good! http://t.co/UZFV4BpzhH @deepseanews
@kylefrischkorn @DyhrmanLab Miss you
@kylefrischkorn @DyhrmanLab And now I am sitting next to your empty desk getting ready to go extractextractextract.
@kylefrischkorn @DyhrmanLab Well, about 5 hours earlier than your post I was eating delicious ramen somewhere around 125th St. So spicy.
Scientists have more fun! MT @goodnesglaciers @WHOI Glaciology lab’s fieldwork training @highlatitude. http://t.co/jPfuhzuIVF
@oceanbendy @kylefrischkorn You can call him Searcy and make him a little cryotube all his own. And then wear it as a necklace.
@kylefrischkorn [S]He probably mixotrophed everybody else.
@kylefrischkorn The little #dino that could.
@kylefrischkorn Also known as SPF-Ginger
@kylefrischkorn #gingerproblems #gingerqueers
Amazing photo! MT @neiltyson The Moon, Sun, International Space Station, & Earth, all lined up. via @ObservingSpace http://t.co/F4jzDb6qJg
@oceanbendy Just as good as you described!
Happy Diatoms to brighten your Wednesday @oceanbendy MT:@Cartoon_Neuron http://t.co/DHvAbBGGwr … #sciart http://t.co/SK9zUeiOaB
@hollybik @NoahFierer Too true
#Significant indeed http://t.co/Yg9XD1OHLS
@kylefrischkorn Wine and podcasts??! What on earth do you have to look forward to on land?
@kylefrischkorn You are tweeting this just to make me jealous…
Goin’ hitech @kylefrischkorn MT Apparently running oceanographic ops on L’Atalante costs like 60,000 euros per day http://t.co/9Z5JMd1Z0P
Great #dataviz @marinebugs: Oceanographic structure drives the assembly processes of microbial eukaryotic communities http://t.co/OttJcGXN01
@kylefrischkorn Amazing.
@jvanderhoop @Musettecaffe coffee and bikes? Is there anything better?!
@kylefrischkorn WET BOOTS = WORST. At least you are wearing your safety gear!
I feel like I have gone through the looking glass. @googlechrome is turning my world upside down. http://t.co/YMqnDSZfQK
@kylefrischkorn @AndreasKrupke I am quite jealous of the facial hair you two have going on right now. –’Stache
@kylefrischkorn Safety first.
@LizKujBehn @jao117 @goodnesglaciers … and clearly not doing a good job as I meant to say “teach @DyhrmanLab”
@LizKujBehn @jao117 @goodnesglaciers Best first tweet ever, well done! I am also trying to teach @LizKujBehn
@ctitusbrown @SlideShare @luizirber Yikes, well… there goes that.
@kylefrischkorn @DyhrmanLab Alas, but at least you can do little ones!
@DyhrmanLab @LamontEarth Also, it has become abundantly clear to me that your internet access far exceeds ours in Antarctica…
@DyhrmanLab @kylefrischkorn @LamontEarth Factorial “Harriet-style” experiment?
Giving @SlideShare a try! Posted my #ASLO2015 talk on eukaryotic metatranscriptome profiling http://t.co/BNRGXKyC3l
@kylefrischkorn @AndreasKrupke Clearly a seasoned pro.
@kylefrischkorn @LamontEarth Beasting it.
@kylefrischkorn … life is hard for you.
My favorite part of cruise-time! RT @kylefrischkorn A @DyhrmanLab cruise tradition: present time! http://t.co/a42c84Aq2f
@kylefrischkorn @DyhrmanLab OOOH! What did you get?!?
@kylefrischkorn @LamontEarth @DyhrmanLab Incubate away, little trichos!
@kylefrischkorn Aww, wish I could tag the ‘dawg’ You wear them well.
@kylefrischkorn @oceanbendy @ElOceanografo How many pull ups can you do?
@kylefrischkorn @DyhrmanLab Though I am jealous of the sunshine, it is a lot nicer than the piles of snow at home on the East Coast.
@kylefrischkorn explores the S. Pacific; rest of #TeamDyhrman at #ASLO2015. MT @DyhrmanLab Au revoir dry land. http://t.co/fHG4EsI3QT
@Wellesley Would not be in aquatic science without her!
@kylefrischkorn @oceanbendy @DyhrmanLab Trying now! Eeek, hard with out a smart phone
@oceanbendy @DyhrmanLab Thank you for all your help!
Blessed to have been Marianne Moore’s student. Winner of Margalef award @Wellesley MT @MarineSteph #ASLO2015 http://t.co/9wnYQ5CvTS
@kylefrischkorn is off and sampling! MT @DyhrmanLab Bungeed, ratchet strapped, tied and taped. @LamontEarth http://t.co/X7Tmep3ivv
#TweetsFromSea to come as @kylefrischkorn heads to the #SouthPacific to hunt down N2-fixers. @DyhrmanLab http://t.co/eZ13RqkfEW #SoloCruise
Love the visual MT @pewenvironment Our ocean spans 71% of the globe, produces over half the oxygen we breathe. http://t.co/eu1VLmA1QU
Completely agree! MT @NatureNews Want to learn a programming language? Try #Python - powerful, free http://t.co/3ITPuc4UQu #WomenInSTEM
Cold. Awesome. A little jealous: Swimming in #Antarctica to promote creation of marine protected areas. http://t.co/0Pq0KntUgo @LewisPugh
Subsurface chlorophyll maximum layers: enduring enigma or mystery solved http://t.co/ktLZbp00Qi #Sverdrup @LexFischer @emoceanographer
How do sponges impact nutrients on coral reefs? Help them find out! Science #crowdfunding through @lets_experiment https://t.co/VB2RKMjKkl
@goodnesglaciers @ggoldleaf Ah, yes. It is sometimes important to take a slightly longer route to your office from your kitchen.
@goodnesglaciers ?!<– I know the name for that punctuation mark now…
@goodnesglaciers @WHOI Were those your tracks that I saw?!
@FluvialSeds Awesome, Sarah!
@PistolShrimpBnd Missing you, @jvanderhoop. Hope the CA sun is treating you well!
@kylefrischkorn One can only hope.
Career inspiration! Women in Oceanography: A Decade Later in @TOSOceanography http://t.co/u9FNejAI7s #WomeninSTEM #Oceanography
@dioptrica @DukeMarineLab Amazing photo!
@kylefrischkorn More than your hourly wage for all the acid washing you are about to do on this cruise.
@kylefrischkorn … I kept my particulates and BSi’s … it could hold APAs!
Rule 1: Never head to sea without glitter RT @kylefrischkorn @DyhrmanLab false alarm. Forgot these essentials. http://t.co/eWSujMbB7d
@kylefrischkorn Oh, shipping. Gotcha.
@kylefrischkorn Woah! Have you already left?
A problem that is all too common: Scientific method: Statistical errors http://t.co/8yUlt1N25N
Truth. MT @wellesleyunderg Open Letter to Wellesley Dining Hall Brunch by Alex Joseph ’10 http://t.co/qR1AZH4BNH
@kylefrischkorn Totally jealous of the new Zargess.
@kylefrischkorn Extra tubing should be there in… 3-5 months. Is that too late?
@kylefrischkorn I want a sticker!
Awesome! RT @seanpue On OS X @AtomEditor has markdown preview! Thanks @tracykteal #t3davis
So bummed to have missed the fabulous @intoosteep interviewing @MaraWritesStuff for @smrtgrls! Can’t wait to listen later.
Great first day of @swcarpentry at #t3davis : coding isn’t getting it right– it is all the time in between.
I am late to the game, but this was true for me, too. You are welcome here http://t.co/eFwtEHrtld by my bud @kylefrischkorn
@kylefrischkorn YES! 30 days not in vain. #TooManyExtractions #WhyDidWeDoExperiment13092580293 #LovingFedEx
Two great N2-Fixer studies in @ISMEJournal: UCYN-A symbiosis http://t.co/Dj9iWedfgR and Amazon River plume http://t.co/KxyLZL0IqF
@kylefrischkorn Yes!! Happily so! Headed to the other coast though…
Neural network approach to ascertain vertical chl a and community composition from in situ fluorescence http://t.co/GFOiVQghjb
@kylefrischkorn @DyhrmanLab Yeah, all I need to say is Tahiti.
Sea ice and mountains gettin’ the papers done MT @ @DyhrmanLab Thesis #inspiration. #PanoramasAndPapers #AlmostDone http://t.co/MaJXfFEPzL
@kylefrischkorn @DyhrmanLab You are filling them well, my friend.
Sleeping penguins: RT @DyhrmanLab If diatoms aren’t your thig (but this is #teamDyhrman speaking) … Penguins! http://t.co/ud2udCCJND
Snowflakes! RT @ DyhrmanLab Let it snow! #HappyHolidays from the #diatoms and #TeamDyhrman @LamontEarth @WHOI http://t.co/XSAkWliPi4
Truly down unda: RT @DyhrmanLab Zodiac sampling. #Antarctica is going to our heads @LamontEarth http://t.co/V3TZq4naZi
Too true! MT @DyhrmanLab Still cold! Really could use some @patagonia gear for this #Antarctic cruise! http://t.co/NWJodL0zLf
Too true! MT @DyrhmanLab Still cold! Really could use some @patagonia gear for this #Antarctic cruise! http://t.co/NWJodL0zLf
@kylefrischkorn Good, right? It is ‘cause we are killin’ the science.
@raphidophyte Safety first! Gotta be visible amongst all the white.
And the photo that was supposed to go with the last tweet. #TweetsFromSea isn’t easy… @DyhrmanLab @kylefrischkorn http://t.co/kV79W1avky
Snow covered incubators and strong #antarctic winds making #science fun! Missin’ @kylefrischkorn and the rest of @DyhrmanLab. #tweetsfromsea
@kylefrischkorn That is an exaggeration. I am merely limiting its playing to the appropriate window (+/- 10 days)
Answers for @kylefrischkorn 1) no longer need to sleep (good, right?), 2) patchy but fabulous, 3) hiphopping my way to a 6pack.
Well, @kylefrischkorn as the penguins looked so confused and excited… I am going to go with no.
2AM local time and bright as day. Perks to doing late night (early morning) sampling in #Antarctic summer. @DyhrmanLab #TweetsFromSea
@jvanderhoop @DyhrmanLab @LamontEarth Yes! Beautiful, eh? I wish I had your #megafauna knowledge right now. And yes, we got drake lake!
Neat @GoPro time lapse of lab setup. Tie everything down! #TweetsFromSea @DyhrmanLab http://t.co/0DYOjSq6IG
@KyKySays Sonya has arrived! #TeamDyhrman is ready to take on the Southern Hemisphere. Happy Thanksgiving!! @DyhrmanLab
6 days hiking Torres del Paine! Now waiting for @DyhrmanLab to arrive in Chile to begin cruise Pprep for #Antarctica. http://t.co/BxqlMYFNoJ
Trouble in the Tropics http://t.co/1awWmtiTZt
Follow @DyhrmanLab while I #TweetAtSea with the help of my land-based buddy @KyKySays
You can follow our #Antarctic cruise at http://t.co/BHudjA4hCS. @DyhrmanLab
Bags packed, paper submitted, #Antarctica here I come! @DyhrmanLab
@KyKySays I want to retweet this gem.
@KyKySays YOU = THE BEST!
@KyKySays Or just hip hop abs ;)
Sometimes I feel like I am getting a PhD in graphic design… not oceanography. #PhDLife
@KyKySays Are you using my ipython script a la Sheean?
@KyKySays You are the meanest…
@KyKySays On it.
@KyKySays Can you give me that?
Half the road, check it @jvanderhoop MT @pritheworld These women are defying cultural barriers in Afghanistan. http://t.co/vbuqMUVKhD
What doesn’t the #microbiome influence? MT @NatGeo: Probiotic treatment for autism: http://t.co/vc0N41rdAg
Alright #oceanography tweeters: what is the one thing you always forget to bring with you on a cruise?
Always a mad dash right before heading out on a research cruise. T-minus 7-days until #Patagonia hiking and #Antarctic diatom chasing.
Last day of #windsurfing in #WoodsHole– but it was amazing! And I saw a HUGE sea turtle @sochunese (strange for this time of year?)
Bayesian transcriptome assembly http://t.co/LPxu37zJuA #genomebiology
@KyKySays Rejected?! Open science, man…
Neat write up on power of iPython Notebooks @ctitusbrown http://t.co/aw4UEL6fjs #python #bioinformatics
@KyKySays Hahaha… edits from STD? That is her FAVORITE phrase.
Photographs from the first australasian #antarctic expedition https://t.co/GU8yasju6X Getting excited!
#GoVote2014 It is more effective than tweeting your governmental gripes.
Just purchased @GoPro for the #TeamDyhrman cruise to #Antarctica. Hoping to see lots of this https://t.co/MmZiFgCZdG and diatoms, of course.
Well put, @phylogenomics RT: The flawed and offensive logic of “Academic Science Isn’t Sexist” in the @nytimes http://t.co/wLeQIveV4Q
@KyKySays So, I don’t fit one of your qualifications but I would make a sick Felicity. Next year?
Female academics: don’t power dress, forget heels – and no flowing hair allowed http://t.co/dJqMdbqQON Sadly familiar.
Open code for open science? http://t.co/z5pwtH8FAm @NatureGeosci Good perspective on improving the quality of scientific code.
@KyKySays That is awesome! Though… slightly… [fill in the blank]
Beautifully written/illustrated story about Michael Moore @WHOI: Chasing Bayla http://t.co/oCzVCdGFEp via @BostonGlobe
@KyKySays Haha– is it just a little culture of Noctoluca in the shape of a dinosaur?
@oceanbendy #buff4science Going above and beyond for HS science fair!
Rare Survey Examines Sexual Assault at M.I.T. http://t.co/uqJo9IgUBT “being ahead of the curve like this matters” @nytimes #MIT
@oceanbendy The R/V Poopsie!
Norway’s currency is half beautiful heatmap. http://t.co/YhizilcO8M #money #dataviz? @CreatorsProject
Big morning in WH RT: @sochunese My Saturday morning. #seaglass #marble #nofilter http://t.co/PJgWjWv3Az
Ten Simple Rules for Writing a PLOS Ten Simple Rules Article http://t.co/WpEQAXIHPG @PLOS Ah.. so you have to have 10 rules (see rule 1)
Nostalgia for froyo + W: MT @Wellesley @TrulyYogurt created a new flavor named Blue Pride in honor of #Wellesley http://t.co/usCy5Pup0i
A replacement for the lovable, though never existent, brontosaurus: the “Waddling Deinocheirus.” http://t.co/aHjG4jSYut @NatureNews
The systematic devaluation of human life and how doctors (really, anyone) can stop it: http://t.co/9kN0RNqX2f @EdgarWoznica #ethics
@KyKySays Oh dear. Extended bus time? What on earth is happening?
Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean http://t.co/ZN7xUsUkLY
De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis http://t.co/grZjwGSdsi #bmcgenomics
On being a man in a women’s space http://t.co/CGBwo3IFDp @wellesleyunderg A thoughtful response to the recent @nytimes article
Woods Hole #porchfest today! @PistolShrimpBnd is going to tare it up.
So I don’t really use #matlab any more, but… this really tickles the #dataviz #nerd in me: http://t.co/NP71m3mp7b
@KyKySays Oh you punny kid! What are you workin’ on?
@marinebugs Neat! I will definitely check it out.
@marinebugs Sigh, yes. Alas, right now I am looking pretty seriously at CA…
@marinebugs Any chance I will see you at ASLO this year? Fingers crossed. PS: Looking for postdocs, already…
Happy #NCOD14! Major strides for #marriageequity this week! But, marriage is not the only issue to worry about: http://t.co/w2hqZDd2Cb
@KyKySays Cosci wins. Duh.
@KyKySays @LamontEarth Ah, bit rainy, eh?
Malala Yousafzai and Kailash Satyarthi Are Given Nobel Peace Prize http://t.co/VOSo09jgpm
@goodnesglaciers Gotta love the WHOI logo! Thanks, exhibit center!
Meeting the next generation of #ocean lovers and #scientists at #SubmergeNYC this weekend @HudsonRiverPark http://t.co/tVPEFfFGot
Felling fully #submerged! A very successful day @HudsonRiverPark for @WHOI. #submergeNYC @PistolShrimpBnd
@KyKySays, you guys ready to publicize the awesomeness that is phytoplankton?
Gumby suits secured! Excited to head to @HudsonRiverPark for the Submerge marine science festival @WHOI
MT: @MooreFound Our new awards will support scientists that will advance data-driven discovery http://t.co/x2oBREfktb Congrats! @ctitusbrown
35,000 #Walruses take to land for lack of sea ice. Embodyment of #climate change @WWF https://t.co/UNi5qC0Dbt
Creatures of the night @nytimesphoto http://t.co/BKSGHsZGJF
A swimmers argument for more marine protected areas. #OneOcean http://t.co/0Jw89KzDXw
A wonderful project (though I am a bit biased…) #WomeninSTEM Well done, ladies! http://t.co/mDpiUCPbFL @googlescifair
Truly sad; even sadder that this is not uncommon: Science’s Sexual Assault Problem http://t.co/5ft5XXHNUO @HopeJahren #WomeninSTEM
#Zombies and #Calculus!? Well done, @mesoplodon! Check it out: https://t.co/8XfZu8sLDi
Women are rocking the #UnitedNations this week. Powerful, eloquent, and only 26. #ClimateChange http://t.co/5i9JZ0W4EK
Congratulations @AlisonBechdel on being named a 2014 #MacFellow! #DykesToWatchOutFor http://t.co/Dwqb6t4JEU
Figure 4. Yikes. #EequalityInSTEM RT @carlystrasser “5 plots on gender you must see” from @plotlygraphs http://t.co/Geo7Tnga4B …
Yikes! Like the ones I saw near @WHOI @jellywatch MT @NSF Jellyfish swarms for up to 100 miles in Gulf of Mexico http://t.co/IXq7Qzs0Ym
#PLOSONE: Ocean Net Heat Flux Influences Seasonal to Interannual Patterns of Plankton Abundance http://t.co/1r5L4NMq35
@KyKySays : so famous MT: @doe_jgi @Columbia @LamontEarth & @stonybrooku build off the brown tide #algae #genome http://t.co/xe0BlC9Ylq
@upfreundt Honestly, I have no idea. I don’t get twitter either (sill).
Some Good News About Whales? MT @jvanderhoop Science Headlines I’d Like To See More Of http://t.co/3qQAOFxrpp … @TheToast
The primary #transcriptome Trichodesmium erythraeum http://t.co/qvYMb05Wdx … @upfreundt Neat approach and findings! Field next?
@upfreundt Thanks for sending around your paper! It was great– I was really happy to see it.
@martinenserink @sciencemagazine @GretchenVogel1 Heroes; truly tragic. A major loss in the fight against this disease.
One day? Perhaps not. #windsurfing https://t.co/XSBfnPCuRR
Choking the Oceans With Plastic http://t.co/U86P0ZBhw4 Taking some #umbrage at this piece. Raise awareness; don’t overstate.
All the pretty microbes! RT @radiolab 365 petri dishes, all of them pretty fabulous, by @klariart http://t.co/exQOCkLqYt
@ctitusbrown Awesome! Congratulations on your new position.
Plankton found on the International Space Station http://t.co/t20WU79Koq via @guardian Hardy little #plankton!
@phylogenomics I really appreciate your perspective and action on gender equality in STEM.
@Ianironwood Which is undoubtably different than yours.
Also, depressing that the second highest autofill for #Feminism is #feminismisawful and don’t forget #FeministsAreUgly.
Equally productive women are tenured less. http://t.co/lrIZUIIFRf The issue extends beyond the ability to be productive. #Feminism
Advantages of #dyslexia in science? Knew there had to be an upside… http://t.co/tkEbhEGpji
http://t.co/UbRbpZYJrt Fascinating study. Way to turn a terrifying experience into great science.
Boradening the ‘scope’ of microbial oceanography http://t.co/iCiqlvAy4E Super exciting for the field! #oceanography #ocean
Beautiful and terrifying visualization of the spread of drought across the US http://t.co/Sy95WeiSyZ @UpshotNYT
How the sun sees you: http://t.co/iXP4zWodpN
Sort of seems like they are making a dig at freckles.
Way to go @USAWomenEagles! Tight game with a great end #WRWC2014 #wrugby
A breakthrough in Mathematics, a field dominated by men (~70% of PhDs) : Female Winner of Fields Medal: http://t.co/cypb28Kcrq
@universalsports Haha, how about a free pass for the day?
Anthropogenic tripling of surface murcury levels http://t.co/gF3K8IAByy @WHOI
Desperately trying to find a bar that has @universalsports. #WRWC2014 US v NZ. #Merica
Amazing talk by Rob Knight on the #humanmicrobiome. Seriously considering the merits of dog ownership for my microbial health.
Oh #Wellesley: What happens when an elite American university kills grade inflation http://t.co/vCyVnRUTLy
Kind of an awesome approach to the nuptial name game: http://t.co/z0OnlZCegi
Phosphorus metabolism and a huge phytoplankton bloom making the front page of the @NYTimes. My work feels justified. http://t.co/dxdYUqp5eC
@nuin Interesting. Have you done that with success? I might give it a go.
Women’s Rugby World Cup - all you need to know http://t.co/vQbRdeXyjq
Rising Airline Crash Fatalities Making 2014 Even More of an Aberration http://t.co/qZhTCHrB9a via @UpshotNYT
Canadian space lunch makes me want space scissors You were right, @jvanderhoop, pretty awesome. https://t.co/13O5Q1JKDX
@ekbors Well, the natural progression of science I suppose. Sigh.
… and probably would have saved tons of time if I had see the updated blog entry: http://t.co/PxjjVUjH4H #bioinformaticsproblems
#circos install was surprisingly involved. Thank goodness for @nuin http://t.co/5xZySmSn24 . Now if only it integrated nicely with #python.
Awesome future scientist! http://t.co/x5exoJ8lQv Have you seen this, @ekbors?
Beyond the great human tragedy; a huge loss for the #AIDS #scientific community. http://t.co/JqHMmZlsxi via @TIMEWorld
Just reread How the Universe Got Its Spots (last time in 10th grade). New perspectives gained now post-topology and as a female scientist.
@rgairnelson @KateClancy @JNRutherford @Mammals_Suck Totally agree with @jvanderhoop. This is exactly the sort of research we need!
#PLOSONE: Survey of Academic Field Experiences (SAFE) http://t.co/qZaq36t2xK. Figure 3 speaks volumes.
An integrated catalog of reference genes in the human gut microbiome http://t.co/kkvwU6W4SK
Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages http://t.co/Qc616tPAYy
Just saw @nils_gehlenborg give a fantastic talk on data visualization at the Marine Microbes GRS. Time to revise some figures.
An important first step– but there is more to do: http://t.co/w86SRA09KZ
Humans might not be totally responsible for the extinction of the carrier pigeon! http://t.co/xdHF5UaRaK
#PLOSONE: Ocean Net Heat Flux Influences Seasonal to Interannual Patterns of Plankton Abundance http://t.co/UpdIAG4WSd
Watching #ourocean2014 live stream. You should too. http://t.co/81iDd7mpxB
“Diversity trumps acidification” http://t.co/zjjwDbB6Be
@mollyoblong PS: We appear to be doing better at Tweeting (as we discussed over Christmas). You more-so than I, alas.
@mollyoblong It came out right before a million deadlines. I am so looking forward to June ending so that I can indulge.
@marinebugs That would be the best!!! Fingers crossed for some good travel funding :)
@marinebugs ASLO 2015 in Spain? Ugh… I need to get to the UK!
@marinebugs Also, when am I going to see you, knuckle head? Any conference plans?
@marinebugs Yes, love the paper! I ended up using Trinity + Trinity Normalization + CD-HIT-EST on MMETSP/Transcriptome data.
@marinebugs Have you tried assembly with different algorithms and then clustering? Did you get good results? Tried it with minimal success.
Chaos and biology: a natural match. http://t.co/JDDZHoFbhh
Sequencing and bioinformatics revolutionizing healthcare in very tangible ways. http://t.co/rh83aFGMll #HTSequencing #Bioinformatics
Well… I guess odds of becoming a PI are : P(female scientist + 2 first author publications) = P(male scientist) http://t.co/hngL6vvMU3
Biological pump as animated by Collen Durkin. Check it out– it is a great video! http://t.co/AZBnQ93ZeK
@jvanderhoop “… a team led by Julie van der Hoop…” So famous!
Tugged out to sea! #DeepDOM http://t.co/eGnXMqbhor
Ammonia-oxidizing bacteria made the @NYTimes ! http://t.co/KInOlaGHTt
Why Rarefying Microbiome Data Is Inadmissible http://t.co/8TlLCaT6a1
-20 freezer diving for SCIENCE! Where did I put those samples…? #frostbite
A bit better than Kon-Tiki if you ask me: A Worldwide Voyage To Prove Stars, Wind And Waves Are Enough http://t.co/6CJYKwrwMl
Completing what is (hopefully) my last homework assignment… ever. #BioOptics #AlmostDone
Confessions of a Grade Inflator, by @pankisseskafka: http://t.co/xW18FuvFqq via @slate
The Origins of “Privilege.” Yeah, Wellesley! http://t.co/0fQAtt0ziX via @NewYorker #WellesleyCollege
Collapse of the West Antarctica ice sheet has begun… http://t.co/Nrrfbg9vQs
RIP Nereus http://t.co/xtZQPmsVwn
http://t.co/InvuFyZ8m3 #queer #WeAreYou
Talk about a good work-life balance. http://t.co/hqNpri6iNJ
Tuesday resolution: #TweetMore #HashtagTwitterSkills
Not scary… awesome! http://t.co/2Zouv6o0pZ
Nice comparison of mapping tools http://t.co/uL7Gf0ygBE #bioinformatics #bwa #bowtie2
Mozilla debuging scientific code? http://t.co/p2rLiahcDP Code #bioinformatics
@emilycorwin http://t.co/ylxiKoUzzA
Approaching our first sample station on the R/V Knorr: follow our progress at http://t.co/2cdQpm80z5.
@marinebugs That would be amazing! I would love to visit Quebec! Similarly, it would be great to get you down to WHOI!
@marinebugs Bummed not to see you, but thanks for the nice comments. We need to coordinate some sort of conference meetup soon!
@marinebugs You tweeted my paper! Thanks :) Miss you– see you at ASLO this year?